From 13698c20d229adf62f00445ade70b2ee41ec2b1a Mon Sep 17 00:00:00 2001
From: Lars Bilke <lars.bilke@ufz.de>
Date: Wed, 11 Dec 2024 08:52:35 +0100
Subject: [PATCH] [nb] subprocess.run needs shell=True when args are given as
string.
---
.../Data/PhaseField/beam_jupyter_notebook/beam.py | 15 +++++++++++++--
1 file changed, 13 insertions(+), 2 deletions(-)
diff --git a/Tests/Data/PhaseField/beam_jupyter_notebook/beam.py b/Tests/Data/PhaseField/beam_jupyter_notebook/beam.py
index f7be321ad51..90970a1ea85 100644
--- a/Tests/Data/PhaseField/beam_jupyter_notebook/beam.py
+++ b/Tests/Data/PhaseField/beam_jupyter_notebook/beam.py
@@ -154,23 +154,32 @@ def ogs_beam(
run(
f"generateStructuredMesh -o {out_dir}/bar_.vtu -e hex --lx {beam_length} --nx {round(beam_length/h)} --ly {beam_height} --ny {round(beam_height/h)} --lz {beam_depth} --nz {round(beam_depth/h)} > {logfile}",
check=True,
+ shell=True,
)
run(
f"NodeReordering -i {out_dir}/bar_.vtu -o {out_dir}/bar.vtu >> {logfile}",
check=True,
+ shell=True,
)
run(
f"ExtractSurface -i {out_dir}/bar.vtu -o {out_dir}/bar_left.vtu -x 1 -y 0 -z 0 >> {logfile}",
check=True,
+ shell=True,
)
run(
f"extractSurface -i {out_dir}/bar.vtu -o {out_dir}/bar_right.vtu -x -1 -y 0 -z 0 >> {logfile}",
check=True,
+ shell=True,
+ )
+ run(
+ f"partmesh -s -o {out_dir} -i {out_dir}/bar.vtu >> {logfile}",
+ check=True,
+ shell=True,
)
- run(f"partmesh -s -o {out_dir} -i {out_dir}/bar.vtu >> {logfile}", check=True)
run(
f"partmesh -m -n 3 -o {out_dir} -i {out_dir}/bar.vtu -- {out_dir}/bar_right.vtu {out_dir}/bar_left.vtu >> {logfile}",
check=True,
+ shell=True,
)
# change properties in prj file
model = ot.Project(
@@ -206,7 +215,9 @@ def ogs_beam(
t0 = time.time()
print(" > OGS started execution ...")
run(
- f"mpirun -n 3 ogs {out_dir}/{prj_name} -o {output_dir} >> {logfile}", check=True
+ f"mpirun -n 3 ogs {out_dir}/{prj_name} -o {output_dir} >> {logfile}",
+ check=True,
+ shell=True,
)
tf = time.time()
print(" > OGS terminated execution. Elapsed time: ", round(tf - t0, 2), " s.")
--
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