diff --git a/scripts/docs/Doxyfile.in b/Documentation/Doxyfile.in
similarity index 100%
rename from scripts/docs/Doxyfile.in
rename to Documentation/Doxyfile.in
diff --git a/scripts/docs/DoxygenLayout.xml b/Documentation/DoxygenLayout.xml
similarity index 100%
rename from scripts/docs/DoxygenLayout.xml
rename to Documentation/DoxygenLayout.xml
diff --git a/scripts/docs/OpenGeoSys-Logo.png b/Documentation/OpenGeoSys-Logo.png
similarity index 100%
rename from scripts/docs/OpenGeoSys-Logo.png
rename to Documentation/OpenGeoSys-Logo.png
diff --git a/scripts/docs/mainpage.dox b/Documentation/mainpage.dox
similarity index 100%
rename from scripts/docs/mainpage.dox
rename to Documentation/mainpage.dox
diff --git a/scripts/base/architecture_option_win.sh b/scripts/base/architecture_option_win.sh
deleted file mode 100644
index 79cf6f902b20bc51bd32e1eeed7c304e9369b3e7..0000000000000000000000000000000000000000
--- a/scripts/base/architecture_option_win.sh
+++ /dev/null
@@ -1,12 +0,0 @@
-if [ "$OPTARG" == "x32" ]; then
-	ARCHITECTURE="x32"
-	WIN_ARCHITECTURE="x86"
-	BITS="32"
-elif [ "$OPTARG" == "x64" ]; then
-	ARCHITECTURE="x64"
-	WIN_ARCHITECTURE="x64"
-	BITS="64"
-else
-	echo "$OPTARG is not a valid argument. Specify x32 or x64."
-	exit 1
-fi
\ No newline at end of file
diff --git a/scripts/base/check_and_cleanup_build_directory.sh b/scripts/base/check_and_cleanup_build_directory.sh
deleted file mode 100644
index 6c98ec2539654e3e7b95c26ce7b2bf42223108d3..0000000000000000000000000000000000000000
--- a/scripts/base/check_and_cleanup_build_directory.sh
+++ /dev/null
@@ -1,10 +0,0 @@
-if [ -z $BUILD_LOCATION ]; then
-	echo "You must specify a build directory (relative to the source directory)."
-	echo "Aborting..."
-	echo "Usage: $0 -d /build/directory"
-	exit 1
-fi
-
-# Cleanup
-rm -rf $BUILD_LOCATION
-mkdir -p $BUILD_LOCATION && cd $BUILD_LOCATION
\ No newline at end of file
diff --git a/scripts/base/check_architecture_option_win.sh b/scripts/base/check_architecture_option_win.sh
deleted file mode 100644
index 8464fb5da535935949cd921aae59ef6ec7629237..0000000000000000000000000000000000000000
--- a/scripts/base/check_architecture_option_win.sh
+++ /dev/null
@@ -1,7 +0,0 @@
-if [ "$OSTYPE" == 'msys' ]; then
-	if [ "$ARCHITECTURE" != "x32" -a "$ARCHITECTURE" != "x64" ]; then
-		echo "You did not pass the cpu architecture as a script parameter. Aborting..."
-		echo "Usage: $0 -a [x32|x64]"
-		exit 1
-	fi
-fi
\ No newline at end of file
diff --git a/scripts/base/configure_compiler.sh b/scripts/base/configure_compiler.sh
deleted file mode 100644
index 2454db71f8dc9952a335ef2b724f2741090c64b7..0000000000000000000000000000000000000000
--- a/scripts/base/configure_compiler.sh
+++ /dev/null
@@ -1,11 +0,0 @@
-NUM_PROCESSORS=""
-if [ "$OSTYPE" == 'msys' ]; then
-	source $SOURCE_LOCATION/scripts/base/configure_win_vs.sh
-else
-	CMAKE_GENERATOR="Unix Makefiles"
-	if [[ "$OSTYPE" == darwin* ]]; then
-		NUM_PROCESSORS=`sysctl hw.ncpu | awk '{print $2}'`
-	else
-		NUM_PROCESSORS=`cat /proc/cpuinfo | grep processor | wc -l`
-	fi
-fi
\ No newline at end of file
diff --git a/scripts/base/configure_win_vs.sh b/scripts/base/configure_win_vs.sh
deleted file mode 100644
index e3b1d20152e72bdcda4931f643746a86129ffdfb..0000000000000000000000000000000000000000
--- a/scripts/base/configure_win_vs.sh
+++ /dev/null
@@ -1,41 +0,0 @@
-# Check Visual Studio version and setup CMake generator
-if [ -z "$VS110COMNTOOLS" ]; then
-	if [ -z "$VS100COMNTOOLS" ]; then
-		if [ -z "$VS90COMNTOOLS" ]; then
-			if [ -z "$VS80COMNTOOLS" ]; then
-				echo "Error: Visual Studio not found"
-				exit 1
-			else
-				WIN_DEVENV_PATH="$VS80COMNTOOLS..\\IDE"
-				CMAKE_GENERATOR="Visual Studio 8 2005"
-			fi
-		else
-			WIN_DEVENV_PATH="$VS90COMNTOOLS..\\IDE"
-			CMAKE_GENERATOR="Visual Studio 9 2008"
-		fi
-	else
-		WIN_DEVENV_PATH="$VS100COMNTOOLS..\\IDE\\"
-		CMAKE_GENERATOR="Visual Studio 10"
-	fi
-else
-	WIN_DEVENV_PATH="$VS110COMNTOOLS..\\IDE\\"
-	CMAKE_GENERATOR="Visual Studio 11"
-	if [ "$ARCHITECTURE" == "x64" ]; then
-		WIN_ARCHITECTURE="x86_amd64"
-	fi
-fi
-
-if [ "$ARCHITECTURE" == "x64" ]; then
-	CMAKE_GENERATOR="$CMAKE_GENERATOR Win64"
-fi
-
-DEVENV_EXE="${WIN_DEVENV_PATH}devenv"
-
-# Replace backslashes in WIN_DEVENV_PATH
-DEVENV_PATH=$(echo "$WIN_DEVENV_PATH" | awk '{ gsub(/\\/, "/"); print }')
-DEVENV_PATH=$(echo "$DEVENV_PATH" | awk '{ gsub(/C:\//, "/c/"); print }')
-
-echo "Visual Studio found: $DEVENV_PATH"
-echo "Devenv: $DEVENV_EXE"
-echo "CMake Generator: $CMAKE_GENERATOR"
-export PATH=$PATH:$DEVENV_PATH
\ No newline at end of file
diff --git a/scripts/base/download_file_with_cmake.sh b/scripts/base/download_file_with_cmake.sh
deleted file mode 100644
index abd9ae41f9d90c28bc9cbe522f1883180fdc718f..0000000000000000000000000000000000000000
--- a/scripts/base/download_file_with_cmake.sh
+++ /dev/null
@@ -1,13 +0,0 @@
-# Argument 1: Download URL (SSL is not working)
-# Argument 2: Destination path
-# Argument 3: MD5-Hash (Optional)
-download_file() {
-	if [ "$#" -eq "2" ]; then
-		echo "file (DOWNLOAD \"$1\" \"$2\" SHOW_PROGRESS)" > download_file.cmake
-	elif [ "$#" -eq "3" ]; then
-		echo "file (DOWNLOAD \"$1\" \"$2\" EXPECTED_MD5 \"$3\" SHOW_PROGRESS)" > download_file.cmake
-	fi
-	echo "Downloading file $1 ..."
-	cmake -P download_file.cmake
-	rm download_file.cmake
-}
\ No newline at end of file
diff --git a/scripts/cmake/DocumentationSetup.cmake b/scripts/cmake/DocumentationSetup.cmake
index 612585f7b4edc54957889e30b73bea8190b8798a..5d0210bd461e2db753531a57033e97de9f674b94 100644
--- a/scripts/cmake/DocumentationSetup.cmake
+++ b/scripts/cmake/DocumentationSetup.cmake
@@ -24,6 +24,6 @@ IF(DOXYGEN_FOUND)
 			COMMENT "Generating docset ...")
 	ENDIF() # DOCS_GENERATE_DOCSET
 
-	CONFIGURE_FILE(scripts/docs/Doxyfile.in ${PROJECT_BINARY_DIR}/Doxyfile)
+	CONFIGURE_FILE(Documentation/Doxyfile.in ${PROJECT_BINARY_DIR}/Doxyfile)
 
 ENDIF() # DOXYGEN_FOUND
diff --git a/scripts/init.sh b/scripts/init.sh
deleted file mode 100644
index 08398dbc16b26ec20c6c1fd4b5b26bae05e04cde..0000000000000000000000000000000000000000
--- a/scripts/init.sh
+++ /dev/null
@@ -1,45 +0,0 @@
-# Get script directory
-SCRIPT_DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
-DIR=$SCRIPT_DIR/..
-source $SCRIPT_DIR/base/download_file_with_cmake.sh
-
-### Init git hooks ###
-
-# Check for uncrustify
-UNCRUSTIFY_LOCATION=`which uncrustify`
-if [ -z "$UNCRUSTIFY_LOCATION" ]; then
-	if [ "$OSTYPE" == 'msys' ]; then
-		mkdir -vp ~/bin
-		export PATH=$PATH:~/bin
-		download_file http://sourceforge.net/projects/uncrustify/files/uncrustify/uncrustify-0.59/uncrustify-0.59-win32.zip/download ./uncrustify-0.59-win32.zip
-		7za x uncrustify-0.59-win32.zip
-		mv uncrustify-0.59-win32/uncrustify.exe ~/bin
-		rm -r uncrustify-0.59-win32*
-		if [ ! -f ~/bin/uncrustify.exe ]; then
-			echo "Error downloading uncrustify! Git hooks not set."
-		else
-			UNCRUSTIFY_LOCATION=~/bin/uncrustify.exe
-		fi
-	else
-		echo "Please install uncrustify (http://uncrustify.sourceforge.net) to setup git hooks."
-		exit 1
-	fi
-fi
-
-cd $DIR
-# Enable git hooks
-# Does not work on Windows at the moment
-if [ ! "$OSTYPE" == 'msys' ]; then
-	cd .git/hooks
-	git init
-	cd ../..
-	git fetch origin
-	cd .git/hooks
-	git pull .. remotes/origin/hooks
-	cd $DIR
-
-	# Set git configs for running uncrustify
-	git config --add --bool hooks.uncrustify true
-	git config hooks.uncrustify.path $UNCRUSTIFY_LOCATION
-	git config hooks.uncrustify.conf $SCRIPT_DIR/style/uncrustify.cfg
-fi
diff --git a/scripts/pack/.DS_Store b/scripts/pack/.DS_Store
deleted file mode 100644
index 7cdff080b1c759a2443b48ceab98f54d549c9772..0000000000000000000000000000000000000000
Binary files a/scripts/pack/.DS_Store and /dev/null differ
diff --git a/scripts/setup/README.md b/scripts/setup/README.md
deleted file mode 100644
index 405e4e9ed7788b7891aed517f05ee3d044715d16..0000000000000000000000000000000000000000
--- a/scripts/setup/README.md
+++ /dev/null
@@ -1,19 +0,0 @@
-# Setup scripts for Windows #
-
-## setup.sh ##
-
-If you are on Windows you can run `setup.sh` on the *Git Bash* to setup all required third party libraries for OGS (including the Data Explorer). Make also sure you have working Internet connection. For more details have a look on the [devguide][dev].
-
-The following options are available:
-
-- `-a [x32|x64]` to build for either 32- or 64-bits
-- `-s` to build Qt with Oracle SQL bindings
-
-A typical call would look like this:
-
-		cd /scripts/setup
-		./setup.sh -a x64 -d
-
-The compilation of the libraries will take some time. Make sure to set the Qt environment variables as described in the [devguide][dev].
-
-[dev]: (http://ufz.github.com/devguide/win-prerequisites/).
\ No newline at end of file
diff --git a/scripts/setup/setup.sh b/scripts/setup/setup.sh
deleted file mode 100644
index be89d383386483af726dce2c0262ac0d4f77e962..0000000000000000000000000000000000000000
--- a/scripts/setup/setup.sh
+++ /dev/null
@@ -1,47 +0,0 @@
-#!/usr/bin/env bash
-
-# Parse options
-while getopts ":a:d:s" opt; do
-	case $opt in
-		a)
-			if [ "$OPTARG" == "x32" ]; then
-				ARCHITECTURE="x32"
-				WIN_ARCHITECTURE="x86"
-			elif [ "$OPTARG" == "x64" ]; then
-				ARCHITECTURE="x64"
-				WIN_ARCHITECTURE="x64"
-			else
-				echo "$OPTARG is not a valid argument. Specify x32 or x64."
-				exit 1
-			fi
-			;;
-		\?)
-			echo "Invalid option: -$OPTARG"
-			exit 1
-			;;
-		:)
-			echo "Option -$OPTARG requires an argument."
-			exit 1
-			;;
-		s)
-			echo "Qt SQL bindings enabled."
-			QT_SQL=true
-			;;
-	esac
-done
-
-SOURCE_LOCATION=`pwd`
-SOURCE_LOCATION="$SOURCE_LOCATION/../.."
-
-source setup_prerequisites.sh
-
-source setup_libraries.sh
-
-# source setup_builds.sh
-
-if [ $QT_WAS_BUILT ]; then
-	echo "Important note: Make sure to add the Qt environment variables!"
-	if [ $QT_SQL ]; then
-		echo "Important note: Make sure to add the instantclient directory to the PATH!"
-	fi
-fi
\ No newline at end of file
diff --git a/scripts/setup/setup_libraries.sh b/scripts/setup/setup_libraries.sh
deleted file mode 100644
index 0e030480c8e078d7111ee0156057cda7ba13a229..0000000000000000000000000000000000000000
--- a/scripts/setup/setup_libraries.sh
+++ /dev/null
@@ -1,195 +0,0 @@
-#!/usr/bin/env bash
-
-LIBS_LOCATION="$SOURCE_LOCATION/../libs"
-
-mkdir -vp $LIBS_LOCATION
-cd $LIBS_LOCATION
-mkdir -vp include
-mkdir -vp lib
-
-QMAKE_LOCATION=`which qmake`
-
-QT_VERSION="qt-everywhere-opensource-src-4.8.3"
-VTK_VERSION="vtk-5.10.0"
-SHAPELIB_VERSION="shapelib-1.3.0"
-LIBGEOTIFF_VERSION="libgeotiff-1.3.0"
-INSTANTCLIENT_VERSION="instantclient_11_2"
-METIS_VERSION="metis-5.0.2"
-BOOST_VERSION="1.53.0"
-BOOST_VERSION_UNDERSCORE=${BOOST_VERSION//./_}
-
-## Windows specific
-if [ "$OSTYPE" == 'msys' ]; then
-	if [ -z "$QMAKE_LOCATION" ]; then
-		# Install Qt
-		if [ ! -d qt ]; then
-			# Download and extract
-			download_file http://releases.qt-project.org/qt4/source/$QT_VERSION.zip ./$QT_VERSION.zip
-			7za x $QT_VERSION.zip
-			mv $QT_VERSION/ qt/
-			rm $QT_VERSION.zip
-
-		elif [ -f qt/bin/qmake.exe -a -f qt/bin/QtGui4.dll -a -f qt/bin/QtGuid4.dll ]; then
-			# Already installed
-			QT_FOUND=true
-		fi
-
-		if [ $QT_FOUND ]; then
-			echo "Qt already installed in $LIBS_LOCATION/qt"
-		else
-			# Compile
-			QT_CONFIGURATION="-debug-and-release"
-
-			# Get instantclient
-			QT_SQL_ARGS=""
-			if [ $QT_SQL ]; then
-				if [ ! -d instantclient ]; then
-					if [ "$ARCHITECTURE" == "x64" ]; then
-						download_file http://dl.dropbox.com/u/5581063/instantclient_11_2_x64.zip ./instantclient_11_2_x64.zip 015bd1b163571988cacf70e7d6185cb5
-						7za x instantclient_11_2_x64.zip
-						mv instantclient_11_2/ instantclient/
-						rm instantclient_11_2_x64.zip
-					fi
-				fi
-				QT_SQL_ARGS="-qt-sql-oci -I %cd%\..\instantclient\sdk\include -L %cd%\..\instantclient\sdk\lib\msvc"
-			fi
-
-			cd qt
-
-			echo " \
-			\"$WIN_DEVENV_PATH\\..\\..\\VC\\vcvarsall.bat\" $WIN_ARCHITECTURE &&\
-			echo y | configure -opensource -no-accessibility -no-dsp -no-vcproj -no-phonon -no-webkit -no-scripttools -nomake demos -nomake examples $QT_CONFIGURATION $QT_SQL_ARGS &&\
-			jom && nmake clean &&\
-			exit\
-			" > build.bat
-
-			$COMSPEC //k build.bat
-			QT_WAS_BUILT=true
-		fi
-
-		export PATH=$PATH:$LIBS_LOCATION/qt/bin
-
-	else
-		echo "Qt already installed in $QMAKE_LOCATION"
-	fi
-
-
-	# Install VTK
-	cd $LIBS_LOCATION
-	if [ ! -d vtk ]; then
-		# Download, extract, rename
-		download_file http://www.vtk.org/files/release/5.10/$VTK_VERSION.tar.gz ./$VTK_VERSION.tar.gz
-		tar -xf $VTK_VERSION.tar.gz
-		rm $VTK_VERSION.tar.gz
-	# Check for existing installation
-	elif [ -f vtk/build/bin/Release/QVTK.lib -a -f vtk/build/bin/Release/vtkRendering.lib ]; then
-		if [ $LIB_DEBUG ]; then
-			if [ -f vtk/build/bin/Debug/QVTK.lib -a -f vtk/build/bin/Debug/vtkRendering.lib ]; then
-				VTK_FOUND=true
-			fi
-		else
-			VTK_FOUND=true
-		fi
-	fi
-
-	if [ $VTK_FOUND ]; then
-		echo "VTK already installed in $LIBS_LOCATION/vtk"
-	else
-		# Compile
-		cd vtk
-		mkdir -vp build
-		cd build
-		cmake .. -DBUILD_TESTING=OFF -DVTK_USE_QT=ON -G "$CMAKE_GENERATOR"
-		cmake ..
-		cmake --build . --config Release
-		cmake --build . --config Release --target QVTK
-		cmake --build . --config Debug
-		cmake --build . --config Debug --target QVTK
-	fi
-
-	# Install libgeotiff
-	cd $LIBS_LOCATION
-	if [ ! -d libgeotiff ]; then
-		# Download, extract
-		download_file http://download.osgeo.org/geotiff/libgeotiff/$LIBGEOTIFF_VERSION.tar.gz ./$LIBGEOTIFF_VERSION.tar.gz
-		tar -xf $LIBGEOTIFF_VERSION.tar.gz
-		mv $LIBGEOTIFF_VERSION/ libgeotiff/
-		rm -rf $LIBGEOTIFF_VERSION.tar.gz
-	elif [ -f libgeotiff/geotiff.lib ]; then
-		LIBGEOTIFF_FOUND=true
-	fi
-
-	if [ $LIBGEOTIFF_FOUND ]; then
-		echo "Libgeotiff already installed in $LIBS_LOCATION/libgeotiff"
-	else
-		# Compile
-		cd libgeotiff
-
-		# Download modified makefile
-		if [ ! -f makefile_mod.vc ]; then
-			download_file http://dl.dropbox.com/u/5581063/makefile_mod.vc ./makefile_mod.vc 14fb13a5bd04ffc298fee7825dc7679f
-		fi
-
-		echo " \
-		\"$WIN_DEVENV_PATH\\..\\..\\VC\\vcvarsall.bat\" $WIN_ARCHITECTURE &&\
-		nmake /f makefile_mod.vc all&&\
-		exit\
-		" > build.bat
-
-		$COMSPEC //k build.bat
-	fi
-
-	# Install Metis
-	cd $LIBS_LOCATION
-	if [ ! -d metis ]; then
-		# Download, extract, rename
-		download_file http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/$METIS_VERSION.tar.gz ./$METIS_VERSION.tar.gz
-		tar -xf $METIS_VERSION.tar.gz
-		mv $METIS_VERSION/ metis/
-		rm $METIS_VERSION.tar.gz
-	# Check for existing installation
-	elif [ -f metis/build/windows/libmetis/Release/metis.lib ]; then
-		METIS_FOUND=true
-	fi
-
-	if [ $METIS_FOUND ]; then
-		echo "Metis already installed in $LIBS_LOCATION/metis"
-	else
-		# Compile
-		cd metis
-		$COMSPEC //c "vsgen.bat -G \"$CMAKE_GENERATOR\""
-		cd build/windows
-		cmake --build . --config Release
-		cd ../..
-		cp build/windows/libmetis/Release/metis.lib ../lib/metis.lib
-		cp include/metis.h ../include/metis.h
-	fi
-
-	# Install Boost
-	cd $LIBS_LOCATION
-	if [ ! -d boost ]; then
-		# Download, extract, rename
-		download_file http://sourceforge.net/projects/boost/files/boost/$BOOST_VERSION/boost_$BOOST_VERSION_UNDERSCORE.zip/download ./boost_$BOOST_VERSION_UNDERSCORE.zip
-		7za x boost_$BOOST_VERSION_UNDERSCORE.zip
-		mv boost_$BOOST_VERSION_UNDERSCORE/ boost/
-		rm boost_$BOOST_VERSION_UNDERSCORE.zip
-	elif [ -d boost/stage/lib ]; then
-		BOOST_FOUND=true
-	fi
-
-	if [ $BOOST_FOUND ]; then
-		echo "Boost is already installed in ..."
-	else
-		# Compile
-		cd boost
-		echo " \
-			\"$WIN_DEVENV_PATH\\..\\..\\VC\\vcvarsall.bat\" $WIN_ARCHITECTURE &&\
-			bootstrap.bat &&\
-			bjam.exe address-model=$BITS &&\
-			exit\
-			" > build.bat
-		$COMSPEC //k build.bat
-	fi
-fi
-
-cd $SOURCE_LOCATION/scripts/setup
diff --git a/scripts/setup/setup_prerequisites.sh b/scripts/setup/setup_prerequisites.sh
deleted file mode 100644
index 5149883346dbb92af1aa0d046b419e8294757838..0000000000000000000000000000000000000000
--- a/scripts/setup/setup_prerequisites.sh
+++ /dev/null
@@ -1,50 +0,0 @@
-#!/usr/bin/env bash
-
-# Check for prerequisites
-CMAKE_LOCATION=`which cmake`
-if [ -z "$CMAKE_LOCATION" ]; then
-	echo "CMake not found! Aborting..."
-	exit 1
-fi
-
-source $SOURCE_LOCATION/scripts/base/download_file_with_cmake.sh
-source $SOURCE_LOCATION/scripts/base/configure_compiler.sh
-
-## Windows specific
-if [ "$OSTYPE" == 'msys' ]; then
-
-	mkdir -vp ~/bin
-	export PATH=$PATH:~/bin
-
-	# 7-zip
-	SEVENZIP_LOCATION=`which 7za`
-	if [ ! -z "$SEVENZIP_LOCATION" ]; then
-		echo "7-zip found."
-	else
-		cd ~/bin
-		download_file http://dl.dropbox.com/u/5581063/7za.exe ./7za.exe e92604e043f51c604b6d1ac3bcd3a202
-	fi
-	SEVENZIP_LOCATION=`which 7za`
-	if [ -z "$SEVENZIP_LOCATION" ]; then
-		echo "7-zip not downloaded! Aborting..."
-		exit 1
-	fi
-
-	# jom
-	JOM_LOCATION=`which jom`
-	if [ ! -z "$JOM_LOCATION" ]; then
-		echo "jom found."
-	else
-		cd ~/bin
-		download_file http://dl.dropbox.com/u/5581063/jom.exe ./jom.exe 335428f223d36f0a39faaa845222346d
-	fi
-	JOM_LOCATION=`which jom`
-	if [ -z "$JOM_LOCATION" ]; then
-		echo "jom not downloaded! Aborting..."
-		exit 1
-	fi
-
-fi
-
-
-cd "$SOURCE_LOCATION/scripts/setup"
\ No newline at end of file