diff --git a/MaterialLib/MPL/VariableType.h b/MaterialLib/MPL/VariableType.h index 9489f61c46c156f374d3ea8ec60a71a6d8850b80..ce4599002594f078c3168342ceeb2b138d90356b 100644 --- a/MaterialLib/MPL/VariableType.h +++ b/MaterialLib/MPL/VariableType.h @@ -61,8 +61,9 @@ enum class Variable : int /// Data type for primary variables, designed to contain both scalar and vector /// data. -using VariableType = std::variant<double, Vector, Eigen::Matrix<double, 4, 1>, - Eigen::Matrix<double, 6, 1>>; +using VariableType = + std::variant<std::monostate, double, Vector, Eigen::Matrix<double, 4, 1>, + Eigen::Matrix<double, 6, 1>>; /// The VariableArray is a std::array of fixed size. Its size is determined by /// the Variable enumerator list. Data type of that array is defined by the diff --git a/ProcessLib/ComponentTransport/ComponentTransportFEM.h b/ProcessLib/ComponentTransport/ComponentTransportFEM.h index 35f87091e1894dffe6f9eb9a1a88097ee9ad9c17..0e64d8fda203840b9a2798fab0aaa14c689c4e00 100644 --- a/ProcessLib/ComponentTransport/ComponentTransportFEM.h +++ b/ProcessLib/ComponentTransport/ComponentTransportFEM.h @@ -855,14 +855,15 @@ public: auto const& phase = medium.phase("AqueousLiquid"); // local_x contains the local concentration and pressure values - NumLib::shapeFunctionInterpolate( - local_C, shape_matrices.N, - std::get<double>(vars[static_cast<int>( - MaterialPropertyLib::Variable::concentration)])); - NumLib::shapeFunctionInterpolate( - local_p, shape_matrices.N, - std::get<double>(vars[static_cast<int>( - MaterialPropertyLib::Variable::phase_pressure)])); + double c_int_pt; + NumLib::shapeFunctionInterpolate(local_C, shape_matrices.N, c_int_pt); + vars[static_cast<int>(MaterialPropertyLib::Variable::concentration)] + .emplace<double>(c_int_pt); + + double p_int_pt; + NumLib::shapeFunctionInterpolate(local_p, shape_matrices.N, p_int_pt); + vars[static_cast<int>(MaterialPropertyLib::Variable::phase_pressure)] + .emplace<double>(p_int_pt); // TODO (naumov) Temporary value not used by current material models. // Need extension of secondary variables interface. diff --git a/ProcessLib/Output/ProcessOutput.cpp b/ProcessLib/Output/ProcessOutput.cpp index ba04136d8ddc25384dddcd5b45913f5b3fe7ab08..4df937cbaeb884c78ecfd78af18af11b0806352d 100644 --- a/ProcessLib/Output/ProcessOutput.cpp +++ b/ProcessLib/Output/ProcessOutput.cpp @@ -10,14 +10,18 @@ #include "ProcessOutput.h" +#ifndef _WIN32 +#ifndef __APPLE__ +#include <cfenv> +#endif // __APPLE__ +#endif // _WIN32 + #include "InfoLib/GitInfo.h" +#include "IntegrationPointWriter.h" #include "MathLib/LinAlg/LinAlg.h" #include "MeshLib/IO/VtkIO/VtuInterface.h" #include "NumLib/DOF/LocalToGlobalIndexMap.h" -#include "IntegrationPointWriter.h" - - /// Copies the ogs_version string containing the release number and the git /// hash. static void addOgsVersion(MeshLib::Mesh& mesh) @@ -253,8 +257,29 @@ void makeOutput(std::string const& file_name, MeshLib::Mesh const& mesh, { // Write output file DBUG("Writing output to '{:s}'.", file_name); + + // Store floating-point exception handling. Output of NaN's triggers + // floating point exceptions. Because we are not debugging VTK (or other + // libraries) at this point, the possibly set exceptions are temporary + // disabled and restored before end of the function. +#ifndef _WIN32 +#ifndef __APPLE__ + fenv_t fe_env; + fegetenv(&fe_env); + fesetenv(FE_DFL_ENV); // Set default environment effectively disabling + // exceptions. +#endif //_WIN32 +#endif //__APPLE__ + MeshLib::IO::VtuInterface vtu_interface(&mesh, data_mode, compress_output); vtu_interface.writeToFile(file_name); + + // Restore floating-point exception handling. +#ifndef _WIN32 +#ifndef __APPLE__ + fesetenv(&fe_env); +#endif //_WIN32 +#endif //__APPLE__ } } // namespace ProcessLib diff --git a/ProcessLib/RichardsMechanics/RichardsMechanicsFEM-impl.h b/ProcessLib/RichardsMechanics/RichardsMechanicsFEM-impl.h index 56080a2cec8626a71cf75e63f9671287fe7003d5..11f2ec9e5d7c1a109b026b1a74432487c23bf1d2 100644 --- a/ProcessLib/RichardsMechanics/RichardsMechanicsFEM-impl.h +++ b/ProcessLib/RichardsMechanics/RichardsMechanicsFEM-impl.h @@ -305,11 +305,7 @@ void RichardsMechanicsLocalAssembler< dNdx_u, N_u, x_coord, _is_axially_symmetric); auto& eps = _ip_data[ip].eps; - variables[static_cast<int>(MPL::Variable::volumetric_strain_rate)] - .emplace<double>(identity2.transpose() * B * u_dot); - auto& sigma_sw = _ip_data[ip].sigma_sw; - auto const& sigma_sw_prev = _ip_data[ip].sigma_sw_prev; auto& S_L = _ip_data[ip].saturation; auto const S_L_prev = _ip_data[ip].saturation_prev; @@ -374,19 +370,79 @@ void RichardsMechanicsLocalAssembler< chi_S_L_prev * (-p_cap_ip + p_cap_dot_ip * dt)) / dt; - // Use previous time step porosity for porosity update, ... - variables[static_cast<int>(MPL::Variable::porosity)] = - _ip_data[ip].porosity_prev; + // Set volumetric strain rate for the general case without swelling. + double const div_u_dot = identity2.transpose() * B * u_dot; + variables[static_cast<int>(MPL::Variable::volumetric_strain_rate)] + .emplace<double>(div_u_dot); + auto& porosity = _ip_data[ip].porosity; - porosity = solid_phase.property(MPL::PropertyType::porosity) - .template value<double>(variables, x_position, t, dt); - // ... then use new porosity. - variables[static_cast<int>(MPL::Variable::porosity)] = porosity; + { // Porosity update + + // Use previous time step porosity for porosity update, ... + variables[static_cast<int>(MPL::Variable::porosity)] = + _ip_data[ip].porosity_prev; + porosity = + solid_phase.property(MPL::PropertyType::porosity) + .template value<double>(variables, x_position, t, dt); + // ... then use new porosity. + variables[static_cast<int>(MPL::Variable::porosity)] = porosity; + } + + // Swelling and possibly volumetric strain rate update. + auto& sigma_sw = _ip_data[ip].sigma_sw; + { + auto const& sigma_sw_prev = _ip_data[ip].sigma_sw_prev; + + // If there is swelling, compute it. Update volumetric strain rate, + // s.t. it corresponds to the mechanical part only. + sigma_sw = sigma_sw_prev; + if (solid_phase.hasProperty( + MPL::PropertyType::swelling_stress_rate)) + { + using DimMatrix = Eigen::Matrix<double, 3, 3>; + auto const sigma_sw_dot = + MathLib::KelvinVector::tensorToKelvin<DisplacementDim>( + solid_phase + .property(MPL::PropertyType::swelling_stress_rate) + .template value<DimMatrix>(variables, x_position, t, + dt)); + sigma_sw += sigma_sw_dot * dt; + + auto const C_el = _ip_data[ip].computeElasticTangentStiffness( + t, x_position, dt, temperature); + + variables[static_cast<int>( + MPL::Variable::volumetric_strain_rate)] + .emplace<double>(div_u_dot + identity2.transpose() * + C_el.inverse() * + sigma_sw_dot); + } + + if (solid_phase.hasProperty(MPL::PropertyType::transport_porosity)) + { + double& phi_tr = _ip_data[ip].transport_porosity; + + // Use previous time step transport_porosity for + // transport_porosity update, ... + variables[static_cast<int>(MPL::Variable::transport_porosity)] = + _ip_data[ip].transport_porosity_prev; + // ... then use new transport_porosity. + phi_tr = + solid_phase.property(MPL::PropertyType::transport_porosity) + .template value<double>(variables, x_position, t, dt); + variables[static_cast<int>(MPL::Variable::transport_porosity)] = + phi_tr; + } + else + { + variables[static_cast<int>(MPL::Variable::transport_porosity)] = + porosity; + } + } double const k_rel = medium->property(MPL::PropertyType::relative_permeability) .template value<double>(variables, x_position, t, dt); - auto const mu = liquid_phase.property(MPL::PropertyType::viscosity) .template value<double>(variables, x_position, t, dt); auto const K_intrinsic = MPL::formEigenTensor<DisplacementDim>( @@ -396,18 +452,6 @@ void RichardsMechanicsLocalAssembler< GlobalDimMatrixType const rho_K_over_mu = K_intrinsic * rho_LR * k_rel / mu; - sigma_sw = sigma_sw_prev; - if (solid_phase.hasProperty(MPL::PropertyType::swelling_stress_rate)) - { - using DimMatrix = Eigen::Matrix<double, 3, 3>; - sigma_sw += - MathLib::KelvinVector::tensorToKelvin<DisplacementDim>( - solid_phase - .property(MPL::PropertyType::swelling_stress_rate) - .template value<DimMatrix>(variables, x_position, t, - dt)) * - dt; - } // // displacement equation, displacement part // @@ -1341,7 +1385,7 @@ void RichardsMechanicsLocalAssembler<ShapeFunctionDisplacement, DisplacementDim>:: computeSecondaryVariableConcrete(double const t, double const dt, std::vector<double> const& local_x, - std::vector<double> const& /*local_x_dot*/) + std::vector<double> const& local_x_dot) { auto p_L = Eigen::Map<typename ShapeMatricesTypePressure::template VectorType< @@ -1352,6 +1396,20 @@ void RichardsMechanicsLocalAssembler<ShapeFunctionDisplacement, Eigen::Map<typename ShapeMatricesTypeDisplacement::template VectorType< displacement_size> const>(local_x.data() + displacement_index, displacement_size); + + auto p_L_dot = + Eigen::Map<typename ShapeMatricesTypePressure::template VectorType< + pressure_size> const>(local_x_dot.data() + pressure_index, + pressure_size); + auto u_dot = + Eigen::Map<typename ShapeMatricesTypeDisplacement::template VectorType< + displacement_size> const>(local_x_dot.data() + displacement_index, + displacement_size); + + auto const& identity2 = MathLib::KelvinVector::Invariants< + MathLib::KelvinVector::KelvinVectorDimensions<DisplacementDim>::value>:: + identity2; + auto const& medium = _process_data.media_map->getMedium(_element.getID()); auto const& liquid_phase = medium->phase("AqueousLiquid"); auto const& solid_phase = medium->phase("Solid"); @@ -1389,6 +1447,10 @@ void RichardsMechanicsLocalAssembler<ShapeFunctionDisplacement, double p_cap_ip; NumLib::shapeFunctionInterpolate(-p_L, N_p, p_cap_ip); + + double p_cap_dot_ip; + NumLib::shapeFunctionInterpolate(-p_L_dot, N_p, p_cap_dot_ip); + variables[static_cast<int>(MPL::Variable::capillary_pressure)] = p_cap_ip; variables[static_cast<int>(MPL::Variable::phase_pressure)] = -p_cap_ip; @@ -1396,15 +1458,38 @@ void RichardsMechanicsLocalAssembler<ShapeFunctionDisplacement, auto const temperature = medium->property(MPL::PropertyType::reference_temperature) .template value<double>(variables, x_position, t, dt); - variables[static_cast<int>(MPL::Variable::temperature)] = temperature; + auto& eps = _ip_data[ip].eps; auto& S_L = _ip_data[ip].saturation; + auto const S_L_prev = _ip_data[ip].saturation_prev; S_L = medium->property(MPL::PropertyType::saturation) .template value<double>(variables, x_position, t, dt); + variables[static_cast<int>(MPL::Variable::liquid_saturation)] = S_L; + variables[static_cast<int>(MPL::Variable::liquid_saturation_rate)] = + (S_L - S_L_prev) / dt; + + auto const chi = [medium, x_position, t, dt](double const S_L) { + MPL::VariableArray variables; + variables.fill(std::numeric_limits<double>::quiet_NaN()); + variables[static_cast<int>(MPL::Variable::liquid_saturation)] = S_L; + return medium->property(MPL::PropertyType::bishops_effective_stress) + .template value<double>(variables, x_position, t, dt); + }; + double const chi_S_L = chi(S_L); + double const chi_S_L_prev = chi(S_L_prev); + + variables[static_cast<int>( + MPL::Variable::effective_pore_pressure_rate)] = + (chi_S_L * (-p_cap_ip) - + chi_S_L_prev * (-p_cap_ip + p_cap_dot_ip * dt)) / + dt; + + // Set volumetric strain rate for the general case without swelling. + double const div_u_dot = identity2.transpose() * B * u_dot; + variables[static_cast<int>(MPL::Variable::volumetric_strain_rate)] + .emplace<double>(div_u_dot); - variables[static_cast<int>(MPL::Variable::transport_porosity)] = - _ip_data[ip].transport_porosity; auto& porosity = _ip_data[ip].porosity; { // Porosity update @@ -1418,6 +1503,57 @@ void RichardsMechanicsLocalAssembler<ShapeFunctionDisplacement, variables[static_cast<int>(MPL::Variable::porosity)] = porosity; } + // Swelling and possibly volumetric strain rate update. + auto& sigma_sw = _ip_data[ip].sigma_sw; + { + auto const& sigma_sw_prev = _ip_data[ip].sigma_sw_prev; + + // If there is swelling, compute it. Update volumetric strain rate, + // s.t. it corresponds to the mechanical part only. + sigma_sw = sigma_sw_prev; + if (solid_phase.hasProperty( + MPL::PropertyType::swelling_stress_rate)) + { + using DimMatrix = Eigen::Matrix<double, 3, 3>; + auto const sigma_sw_dot = + MathLib::KelvinVector::tensorToKelvin<DisplacementDim>( + solid_phase + .property(MPL::PropertyType::swelling_stress_rate) + .template value<DimMatrix>(variables, x_position, t, + dt)); + sigma_sw += sigma_sw_dot * dt; + + auto const C_el = _ip_data[ip].computeElasticTangentStiffness( + t, x_position, dt, temperature); + + variables[static_cast<int>( + MPL::Variable::volumetric_strain_rate)] + .emplace<double>(div_u_dot + identity2.transpose() * + C_el.inverse() * + sigma_sw_dot); + } + + if (solid_phase.hasProperty(MPL::PropertyType::transport_porosity)) + { + double& phi_tr = _ip_data[ip].transport_porosity; + + // Use previous time step transport_porosity for + // transport_porosity update, ... + variables[static_cast<int>(MPL::Variable::transport_porosity)] = + _ip_data[ip].transport_porosity_prev; + // ... then use new transport_porosity. + phi_tr = + solid_phase.property(MPL::PropertyType::transport_porosity) + .template value<double>(variables, x_position, t, dt); + variables[static_cast<int>(MPL::Variable::transport_porosity)] = + phi_tr; + } + else + { + variables[static_cast<int>(MPL::Variable::transport_porosity)] = + porosity; + } + } auto const mu = liquid_phase.property(MPL::PropertyType::viscosity) .template value<double>(variables, x_position, t, dt); auto const rho_LR = diff --git a/ProcessLib/RichardsMechanics/Tests.cmake b/ProcessLib/RichardsMechanics/Tests.cmake index c29d5dca89026ed6f5c50fce9aa552b7dbaafbee..7593828cdda29475725dc5684574dd69bf796d8e 100644 --- a/ProcessLib/RichardsMechanics/Tests.cmake +++ b/ProcessLib/RichardsMechanics/Tests.cmake @@ -178,7 +178,7 @@ AddTest( GLOB RichardsFlow_2d_small_pcs_0_ts_*.vtu epsilon epsilon 1e-15 0 GLOB RichardsFlow_2d_small_pcs_0_ts_*.vtu pressure pressure 1e-7 1e-15 GLOB RichardsFlow_2d_small_pcs_0_ts_*.vtu pressure_interpolated pressure_interpolated 1e-7 1e-15 - GLOB RichardsFlow_2d_small_pcs_0_ts_*.vtu saturation saturation 1e-11 1e-15 + GLOB RichardsFlow_2d_small_pcs_0_ts_*.vtu saturation saturation 2e-11 1e-15 GLOB RichardsFlow_2d_small_pcs_0_ts_*.vtu saturation_avg saturation_avg 1e-11 1e-15 GLOB RichardsFlow_2d_small_pcs_0_ts_*.vtu velocity velocity 1e-15 1e-15 GLOB RichardsFlow_2d_small_pcs_0_ts_*.vtu HydraulicFlow HydraulicFlow 1e-13 0 diff --git a/ProcessLib/TimeLoop.cpp b/ProcessLib/TimeLoop.cpp index 8ab2d6f8f1e7d1a8400a616d1ffe22ee6303e58e..ef1e29fd1b1e1a00b267f0620506bd3cba793824 100644 --- a/ProcessLib/TimeLoop.cpp +++ b/ProcessLib/TimeLoop.cpp @@ -648,8 +648,8 @@ void postTimestepForAllProcesses( } auto& x = *process_solutions[process_id]; auto& x_dot = *x_dots[process_id]; - pcs.postTimestep(process_solutions, t, dt, process_id); pcs.computeSecondaryVariable(t, dt, x, x_dot, process_id); + pcs.postTimestep(process_solutions, t, dt, process_id); } } diff --git a/Tests/Data/RichardsMechanics/RichardsFlow_2d_quasinewton_pcs_0_ts_0_t_0.000000.vtu b/Tests/Data/RichardsMechanics/RichardsFlow_2d_quasinewton_pcs_0_ts_0_t_0.000000.vtu index 3ee69041eefef6249020d18e8802842bae3d6bd7..8a4bbb41b321f4211ac754bd921387af355877e5 100644 --- a/Tests/Data/RichardsMechanics/RichardsFlow_2d_quasinewton_pcs_0_ts_0_t_0.000000.vtu +++ b/Tests/Data/RichardsMechanics/RichardsFlow_2d_quasinewton_pcs_0_ts_0_t_0.000000.vtu @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:7da541220edc3a065913a060e073c5cec35ac04bfff888b18b22f70f38f4535f -size 13532 +oid sha256:eea28d1cbe959b02ba953d45e08fe2e2e06341bce3efa5cb45cda9727a7815eb +size 11708 diff --git a/Tests/Data/RichardsMechanics/RichardsFlow_2d_quasinewton_pcs_0_ts_104_t_2000.000000.vtu b/Tests/Data/RichardsMechanics/RichardsFlow_2d_quasinewton_pcs_0_ts_104_t_2000.000000.vtu index 4b5d7527f74fab91a9e4fcc7068586cb7753ee5a..ab80e73bc4dc51aeb8d51846a2a87116e2aa4489 100644 --- a/Tests/Data/RichardsMechanics/RichardsFlow_2d_quasinewton_pcs_0_ts_104_t_2000.000000.vtu +++ b/Tests/Data/RichardsMechanics/RichardsFlow_2d_quasinewton_pcs_0_ts_104_t_2000.000000.vtu @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:033d9dbe98cfca74f1226f5113d487afdeb7550953cae27fa55186689c2eeef5 -size 48468 +oid sha256:7ef5d757f5f7bc1253b2b29f1f4e8fed6e0e72ca0acd2b4f0ebe4e98e3c2687b +size 93432 diff --git a/Tests/Data/RichardsMechanics/RichardsFlow_2d_quasinewton_pcs_0_ts_19_t_318.000000.vtu b/Tests/Data/RichardsMechanics/RichardsFlow_2d_quasinewton_pcs_0_ts_19_t_318.000000.vtu index e42fbeabb4ae4187e96aa73da36ffbb01a864fc9..0eb61a2ef479b0a40db1f038c2dc410db409f669 100644 --- a/Tests/Data/RichardsMechanics/RichardsFlow_2d_quasinewton_pcs_0_ts_19_t_318.000000.vtu +++ b/Tests/Data/RichardsMechanics/RichardsFlow_2d_quasinewton_pcs_0_ts_19_t_318.000000.vtu @@ -1,3 +1,3 @@ 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a/Tests/Data/RichardsMechanics/gravity_pcs_0_ts_9_t_0.080000.vtu +++ b/Tests/Data/RichardsMechanics/gravity_pcs_0_ts_9_t_0.080000.vtu @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:b77009bf25b5220f0708c92d7868e8eb972bdb8b5436cb71412fc8d65fcede52 -size 44435 +oid sha256:f05beb55b4c07e9e24fd3edbc50c4de2d9aaa635c7557f2456a9cdc23dd006c1 +size 93023 diff --git a/Tests/Data/RichardsMechanics/orthotropic_power_law_permeability_xyz.prj b/Tests/Data/RichardsMechanics/orthotropic_power_law_permeability_xyz.prj index b7ff216e390da41129443a01bf858b78104c38e5..33a373adc48ffa2ac23fcfa56e448ff0104991a7 100644 --- a/Tests/Data/RichardsMechanics/orthotropic_power_law_permeability_xyz.prj +++ b/Tests/Data/RichardsMechanics/orthotropic_power_law_permeability_xyz.prj @@ -28,6 +28,7 @@ <secondary_variable internal_name="velocity" output_name="velocity"/> <secondary_variable internal_name="saturation" output_name="saturation"/> <secondary_variable internal_name="porosity" output_name="porosity"/> + <secondary_variable internal_name="transport_porosity" output_name="transport_porosity"/> </secondary_variables> <specific_body_force>0 0</specific_body_force> </process> @@ -82,7 +83,7 @@ </property> <property> <name>transport_porosity</name> - <type>PorosityFromMassBalance</type> + <type>TransportPorosityFromMassBalance</type> <initial_porosity>phi0</initial_porosity> <minimal_porosity>0</minimal_porosity> <maximal_porosity>1</maximal_porosity> diff --git a/Tests/Data/RichardsMechanics/orthotropic_power_law_permeability_xyz_pcs_0_ts_27_t_1.500000.vtu b/Tests/Data/RichardsMechanics/orthotropic_power_law_permeability_xyz_pcs_0_ts_27_t_1.500000.vtu index ed565cd7b169f8b52147a911b0377bb9c6e1c26a..c68d4706d03891dcf58e98d215c1f34bb1cb7646 100644 --- a/Tests/Data/RichardsMechanics/orthotropic_power_law_permeability_xyz_pcs_0_ts_27_t_1.500000.vtu +++ b/Tests/Data/RichardsMechanics/orthotropic_power_law_permeability_xyz_pcs_0_ts_27_t_1.500000.vtu @@ -1,3 +1,3 @@ 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