From f077de26d5bc3cfef0dc520ba61e895de44816b9 Mon Sep 17 00:00:00 2001
From: renchao_lu <renchao.lu@gmail.com>
Date: Tue, 26 Feb 2019 00:34:52 +0100
Subject: [PATCH] [T] Benchmark of tracer test.
---
ProcessLib/ComponentTransport/Tests.cmake | 21 ++
.../TracerSimulation/TracerSimulation.gml | 3 +
.../TracerSimulation/TracerSimulation.prj | 290 ++++++++++++++++++
.../TracerSimulation/TracerSimulation.vtu | 3 +
...imulation_pcs_1_ts_100_t_100000.000000.vtu | 3 +
...1_ts_100_t_100000.000000_expected_ogs5.vtu | 3 +
...rSimulation_pcs_1_ts_20_t_20000.000000.vtu | 3 +
...s_1_ts_20_t_20000.000000_expected_ogs5.vtu | 3 +
...rSimulation_pcs_1_ts_40_t_40000.000000.vtu | 3 +
...s_1_ts_40_t_40000.000000_expected_ogs5.vtu | 3 +
...rSimulation_pcs_1_ts_60_t_60000.000000.vtu | 3 +
...s_1_ts_60_t_60000.000000_expected_ogs5.vtu | 3 +
...rSimulation_pcs_1_ts_80_t_80000.000000.vtu | 3 +
...s_1_ts_80_t_80000.000000_expected_ogs5.vtu | 3 +
14 files changed, 347 insertions(+)
create mode 100644 Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation.gml
create mode 100644 Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation.prj
create mode 100644 Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation.vtu
create mode 100644 Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_100_t_100000.000000.vtu
create mode 100755 Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_100_t_100000.000000_expected_ogs5.vtu
create mode 100644 Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_20_t_20000.000000.vtu
create mode 100755 Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_20_t_20000.000000_expected_ogs5.vtu
create mode 100644 Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_40_t_40000.000000.vtu
create mode 100755 Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_40_t_40000.000000_expected_ogs5.vtu
create mode 100644 Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_60_t_60000.000000.vtu
create mode 100755 Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_60_t_60000.000000_expected_ogs5.vtu
create mode 100644 Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_80_t_80000.000000.vtu
create mode 100755 Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_80_t_80000.000000_expected_ogs5.vtu
diff --git a/ProcessLib/ComponentTransport/Tests.cmake b/ProcessLib/ComponentTransport/Tests.cmake
index 64bedb473e0..4b63101058f 100644
--- a/ProcessLib/ComponentTransport/Tests.cmake
+++ b/ProcessLib/ComponentTransport/Tests.cmake
@@ -451,6 +451,27 @@ AddTest(
cube_1x1x1_hex_1e3_right_pcs_1_ts_1_t_1.000000.vtu cube_1x1x1_hex_1e3_right_pcs_1_ts_1_t_1.000000.vtu Si Si 1e-10 1e-16
)
+AddTest(
+ NAME 2D_StaggeredScheme_ComponentTransport_TracerSimulation
+ PATH Parabolic/ComponentTransport/TracerSimulation
+ EXECUTABLE ogs
+ EXECUTABLE_ARGS TracerSimulation.prj
+ WRAPPER time
+ TESTER vtkdiff
+ REQUIREMENTS NOT OGS_USE_MPI
+ DIFF_DATA
+ TracerSimulation_pcs_1_ts_20_t_20000.000000_expected_ogs5.vtu TracerSimulation_pcs_1_ts_20_t_20000.000000.vtu Cs Cs 4e-7 1e-10
+ TracerSimulation_pcs_1_ts_40_t_40000.000000_expected_ogs5.vtu TracerSimulation_pcs_1_ts_40_t_40000.000000.vtu Cs Cs 1.3e-7 1e-10
+ TracerSimulation_pcs_1_ts_60_t_60000.000000_expected_ogs5.vtu TracerSimulation_pcs_1_ts_60_t_60000.000000.vtu Cs Cs 1.3e-7 1e-10
+ TracerSimulation_pcs_1_ts_80_t_80000.000000_expected_ogs5.vtu TracerSimulation_pcs_1_ts_80_t_80000.000000.vtu Cs Cs 1.3e-7 1e-10
+ TracerSimulation_pcs_1_ts_100_t_100000.000000_expected_ogs5.vtu TracerSimulation_pcs_1_ts_100_t_100000.000000.vtu Cs Cs 1.3e-7 1e-10
+ TracerSimulation_pcs_1_ts_20_t_20000.000000_expected_ogs5.vtu TracerSimulation_pcs_1_ts_20_t_20000.000000.vtu pressure pressure 1.3e-7 1e-10
+ TracerSimulation_pcs_1_ts_40_t_40000.000000_expected_ogs5.vtu TracerSimulation_pcs_1_ts_40_t_40000.000000.vtu pressure pressure 1.3e-7 1e-10
+ TracerSimulation_pcs_1_ts_60_t_60000.000000_expected_ogs5.vtu TracerSimulation_pcs_1_ts_60_t_60000.000000.vtu pressure pressure 1.3e-7 1e-10
+ TracerSimulation_pcs_1_ts_80_t_80000.000000_expected_ogs5.vtu TracerSimulation_pcs_1_ts_80_t_80000.000000.vtu pressure pressure 1.3e-7 1e-10
+ TracerSimulation_pcs_1_ts_100_t_100000.000000_expected_ogs5.vtu TracerSimulation_pcs_1_ts_100_t_100000.000000.vtu pressure pressure 1.3e-7 1e-10
+)
+
AddTest(
NAME LARGE_2D_ComponentTransport_Goswami
PATH Parabolic/ComponentTransport/goswami
diff --git a/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation.gml b/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation.gml
new file mode 100644
index 00000000000..bf6dd69ac72
--- /dev/null
+++ b/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation.gml
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:1c2b00c5d4deb6e4f8e4780eb72d438abada593e2e0d331e3527e940405f46c0
+size 702
diff --git a/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation.prj b/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation.prj
new file mode 100644
index 00000000000..f63274053e3
--- /dev/null
+++ b/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation.prj
@@ -0,0 +1,290 @@
+<?xml version="1.0" encoding="ISO-8859-1"?>
+<OpenGeoSysProject>
+ <mesh>TracerSimulation.vtu</mesh>
+ <geometry>TracerSimulation.gml</geometry>
+ <processes>
+ <process>
+ <name>hc</name>
+ <type>ComponentTransport</type>
+ <integration_order>2</integration_order>
+ <coupling_scheme>staggered</coupling_scheme>
+ <process_variables>
+ <concentration>Cs</concentration>
+ <pressure>pressure</pressure>
+ </process_variables>
+ <fluid>
+ <density>
+ <type>Constant</type>
+ <value>1e3</value>
+ </density>
+ <viscosity>
+ <type>Constant</type>
+ <value>1e-3</value>
+ </viscosity>
+ </fluid>
+ <porous_medium>
+ <porous_medium id="0">
+ <permeability>
+ <type>Constant</type>
+ <permeability_tensor_entries>kappa</permeability_tensor_entries>
+ </permeability>
+ <porosity>
+ <type>Constant</type>
+ <porosity_parameter>porosity</porosity_parameter>
+ </porosity>
+ <storage>
+ <type>Constant</type>
+ <value>0.0</value>
+ </storage>
+ </porous_medium>
+ </porous_medium>
+ <fluid_reference_density>rho_fluid</fluid_reference_density>
+ <retardation_factor>retardation</retardation_factor>
+ <decay_rate>decay</decay_rate>
+ <specific_body_force>0 0</specific_body_force>
+ <secondary_variables>
+ <secondary_variable type="static" internal_name="darcy_velocity" output_name="darcy_velocity"/>
+ </secondary_variables>
+ </process>
+ </processes>
+ <media>
+ <medium id="0">
+ <phases>
+ <phase>
+ <type>AqueousLiquid</type>
+ <components>
+ <component>
+ <name>Cs</name>
+ <properties>
+ <property>
+ <name>molecular_diffusion</name>
+ <type>Constant</type>
+ <value>1e-9</value>
+ </property>
+ </properties>
+ </component>
+ </components>
+ </phase>
+ </phases>
+ <properties>
+ <property>
+ <name>longitudinal_dispersivity</name>
+ <type>Constant</type>
+ <value>0.2</value>
+ </property>
+ <property>
+ <name>transversal_dispersivity</name>
+ <type>Constant</type>
+ <value>0.2</value>
+ </property>
+ </properties>
+ </medium>
+ </media>
+ <time_loop>
+ <global_process_coupling>
+ <max_iter>6</max_iter>
+ <convergence_criteria>
+ <!-- convergence criterion for the first process (p) -->
+ <convergence_criterion>
+ <type>DeltaX</type>
+ <norm_type>NORM2</norm_type>
+ <reltol>1e-14</reltol>
+ </convergence_criterion>
+ <!-- convergence criterion for the second process (Cs) -->
+ <convergence_criterion>
+ <type>DeltaX</type>
+ <norm_type>NORM2</norm_type>
+ <reltol>1e-14</reltol>
+ </convergence_criterion>
+ </convergence_criteria>
+ </global_process_coupling>
+ <processes>
+ <!-- convergence criterion for hydraulic equation -->
+ <process ref="hc">
+ <nonlinear_solver>basic_picard</nonlinear_solver>
+ <convergence_criterion>
+ <type>DeltaX</type>
+ <norm_type>NORM2</norm_type>
+ <reltol>1e-14</reltol>
+ </convergence_criterion>
+ <time_discretization>
+ <type>BackwardEuler</type>
+ </time_discretization>
+ <time_stepping>
+ <type>FixedTimeStepping</type>
+ <t_initial>0.0</t_initial>
+ <t_end>100000</t_end>
+ <timesteps>
+ <pair>
+ <repeat>100</repeat>
+ <delta_t>1000</delta_t>
+ </pair>
+ </timesteps>
+ </time_stepping>
+ </process>
+ <!-- convergence criterion for component transport equation (Cs) -->
+ <process ref="hc">
+ <nonlinear_solver>basic_picard</nonlinear_solver>
+ <convergence_criterion>
+ <type>DeltaX</type>
+ <norm_type>NORM2</norm_type>
+ <reltol>1e-14</reltol>
+ </convergence_criterion>
+ <time_discretization>
+ <type>BackwardEuler</type>
+ </time_discretization>
+ <time_stepping>
+ <type>FixedTimeStepping</type>
+ <t_initial>0.0</t_initial>
+ <t_end>100000</t_end>
+ <timesteps>
+ <pair>
+ <repeat>100</repeat>
+ <delta_t>1000</delta_t>
+ </pair>
+ </timesteps>
+ </time_stepping>
+ </process>
+ </processes>
+ <output>
+ <type>VTK</type>
+ <prefix>TracerSimulation</prefix>
+ <timesteps>
+ <pair>
+ <repeat>5</repeat>
+ <each_steps>20</each_steps>
+ </pair>
+ </timesteps>
+ <variables>
+ <variable>Cs</variable>
+ <variable>pressure</variable>
+ <variable>darcy_velocity</variable>
+ </variables>
+ </output>
+ </time_loop>
+ <parameters>
+ <parameter>
+ <name>kappa</name>
+ <type>Constant</type>
+ <values>1.019368e-11 0 0 1.019368e-11</values>
+ </parameter>
+ <parameter>
+ <name>porosity</name>
+ <type>Constant</type>
+ <value>0.2</value>
+ </parameter>
+ <parameter>
+ <name>rho_fluid</name>
+ <type>Constant</type>
+ <value>1000</value>
+ </parameter>
+ <parameter>
+ <name>retardation</name>
+ <type>Constant</type>
+ <value>1</value>
+ </parameter>
+ <parameter>
+ <name>decay</name>
+ <type>Constant</type>
+ <value>0</value>
+ </parameter>
+ <parameter>
+ <name>p0</name>
+ <type>Constant</type>
+ <value>0</value>
+ </parameter>
+ <parameter>
+ <name>p_Neumann_left</name>
+ <type>Constant</type>
+ <value>3e-2</value>
+ </parameter>
+ <parameter>
+ <name>p_Dirichlet_right</name>
+ <type>Constant</type>
+ <value>0</value>
+ </parameter>
+ <parameter>
+ <name>c0</name>
+ <type>Constant</type>
+ <value>0</value>
+ </parameter>
+ <parameter>
+ <name>c_spatial</name>
+ <type>Constant</type>
+ <value>1</value>
+ </parameter>
+ <parameter>
+ <name>c_Dirichlet_left</name>
+ <type>CurveScaled</type>
+ <curve>c_temporal</curve>
+ <parameter>c_spatial</parameter>
+ </parameter>
+ </parameters>
+ <curves>
+ <curve>
+ <name>c_temporal</name>
+ <coords>0 10000 10000.001 100000</coords>
+ <values>1e-5 1e-5 0 0</values>
+ </curve>
+ </curves>
+ <process_variables>
+ <process_variable>
+ <name>pressure</name>
+ <components>1</components>
+ <order>1</order>
+ <initial_condition>p0</initial_condition>
+ <boundary_conditions>
+ <boundary_condition>
+ <geometrical_set>geometry</geometrical_set>
+ <geometry>left</geometry>
+ <type>Neumann</type>
+ <parameter>p_Neumann_left</parameter>
+ </boundary_condition>
+ <boundary_condition>
+ <geometrical_set>geometry</geometrical_set>
+ <geometry>right</geometry>
+ <type>Dirichlet</type>
+ <parameter>p_Dirichlet_right</parameter>
+ </boundary_condition>
+ </boundary_conditions>
+ </process_variable>
+ <process_variable>
+ <name>Cs</name>
+ <components>1</components>
+ <order>1</order>
+ <initial_condition>c0</initial_condition>
+ <boundary_conditions>
+ <boundary_condition>
+ <geometrical_set>geometry</geometrical_set>
+ <geometry>left</geometry>
+ <type>Dirichlet</type>
+ <parameter>c_Dirichlet_left</parameter>
+ </boundary_condition>
+ </boundary_conditions>
+ </process_variable>
+ </process_variables>
+ <nonlinear_solvers>
+ <nonlinear_solver>
+ <name>basic_picard</name>
+ <type>Picard</type>
+ <max_iter>10</max_iter>
+ <linear_solver>general_linear_solver</linear_solver>
+ </nonlinear_solver>
+ </nonlinear_solvers>
+ <linear_solvers>
+ <linear_solver>
+ <name>general_linear_solver</name>
+ <lis>-i bicgstab -p ilut -tol 1e-8 -maxiter 20000</lis>
+ <eigen>
+ <solver_type>BiCGSTAB</solver_type>
+ <precon_type>ILUT</precon_type>
+ <max_iteration_step>10000</max_iteration_step>
+ <error_tolerance>1e-12</error_tolerance>
+ </eigen>
+ <petsc>
+ <prefix>hc</prefix>
+ <parameters>-hc_ksp_type bcgs -hc_pc_type bjacobi -hc_ksp_rtol 1e-8 -hc_ksp_max_it 20000</parameters>
+ </petsc>
+ </linear_solver>
+ </linear_solvers>
+</OpenGeoSysProject>
diff --git a/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation.vtu b/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation.vtu
new file mode 100644
index 00000000000..02409115fee
--- /dev/null
+++ b/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation.vtu
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:31716dc187cb09943833193e11f056937eec5d839424950ab4874e6f68a74dc7
+size 177539
diff --git a/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_100_t_100000.000000.vtu b/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_100_t_100000.000000.vtu
new file mode 100644
index 00000000000..39effc2c8a3
--- /dev/null
+++ b/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_100_t_100000.000000.vtu
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:35d3abfc30314cf96d38a68f121a97d5b9805728443445b2887b351bac62ebb6
+size 73917
diff --git a/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_100_t_100000.000000_expected_ogs5.vtu b/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_100_t_100000.000000_expected_ogs5.vtu
new file mode 100755
index 00000000000..dbfbaa4452e
--- /dev/null
+++ b/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_100_t_100000.000000_expected_ogs5.vtu
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
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diff --git a/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_20_t_20000.000000.vtu b/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_20_t_20000.000000.vtu
new file mode 100644
index 00000000000..4b470d1ae88
--- /dev/null
+++ b/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_20_t_20000.000000.vtu
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
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diff --git a/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_20_t_20000.000000_expected_ogs5.vtu b/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_20_t_20000.000000_expected_ogs5.vtu
new file mode 100755
index 00000000000..5883c1a49e6
--- /dev/null
+++ b/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_20_t_20000.000000_expected_ogs5.vtu
@@ -0,0 +1,3 @@
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diff --git a/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_40_t_40000.000000.vtu b/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_40_t_40000.000000.vtu
new file mode 100644
index 00000000000..f86a358eab5
--- /dev/null
+++ b/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_40_t_40000.000000.vtu
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
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diff --git a/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_40_t_40000.000000_expected_ogs5.vtu b/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_40_t_40000.000000_expected_ogs5.vtu
new file mode 100755
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diff --git a/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_60_t_60000.000000.vtu b/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_60_t_60000.000000.vtu
new file mode 100644
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diff --git a/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_60_t_60000.000000_expected_ogs5.vtu b/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_60_t_60000.000000_expected_ogs5.vtu
new file mode 100755
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diff --git a/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_80_t_80000.000000.vtu b/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_80_t_80000.000000.vtu
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diff --git a/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_80_t_80000.000000_expected_ogs5.vtu b/Tests/Data/Parabolic/ComponentTransport/TracerSimulation/TracerSimulation_pcs_1_ts_80_t_80000.000000_expected_ogs5.vtu
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--
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