From f8061182cdccb27ecd3974cfd3abc4bef7aebdce Mon Sep 17 00:00:00 2001
From: Lars Bilke <lars.bilke@ufz.de>
Date: Wed, 24 Jul 2024 15:36:03 +0200
Subject: [PATCH] [T] Rewritten VoxelGridFromLayers snakemake test to pytest.
---
Applications/Utils/Tests.cmake | 28 ++++----
Applications/Utils/VoxelGridFromLayers.smk | 70 -------------------
.../AREHS_2D_AABB_inverted.vtu | 0
.../AREHS_2D_AABB_regular.vtu | 0
.../AREHS_3D_AABB_inverted.vtu | 0
.../AREHS_3D_AABB_regular.vtu | 0
.../VoxelGridFromLayers}/AREHS_Layer0.vtu | 0
.../VoxelGridFromLayers}/AREHS_Layer15.vtu | 0
.../VoxelGridFromLayers}/AREHS_Layer17.vtu | 0
.../VoxelGridFromLayers}/AREHS_Layer9.vtu | 0
.../VoxelGridFromLayers}/AREHS_fault.vtu | 0
.../VoxelGridFromLayers}/AREHS_test.vtu | 0
.../VoxelGridFromLayers}/AREHS_test_fault.vtu | 0
.../VoxelGridFromLayers}/AREHS_test_iso.vtu | 0
.../AREHS_test_layers.txt | 0
.../test_voxelgrid_from_layers.py | 40 +++++++++++
16 files changed, 52 insertions(+), 86 deletions(-)
delete mode 100644 Applications/Utils/VoxelGridFromLayers.smk
rename Tests/Data/{MeshLib => Utils/VoxelGridFromLayers}/AREHS_2D_AABB_inverted.vtu (100%)
rename Tests/Data/{MeshLib => Utils/VoxelGridFromLayers}/AREHS_2D_AABB_regular.vtu (100%)
rename Tests/Data/{MeshLib => Utils/VoxelGridFromLayers}/AREHS_3D_AABB_inverted.vtu (100%)
rename Tests/Data/{MeshLib => Utils/VoxelGridFromLayers}/AREHS_3D_AABB_regular.vtu (100%)
rename Tests/Data/{MeshLib => Utils/VoxelGridFromLayers}/AREHS_Layer0.vtu (100%)
rename Tests/Data/{MeshLib => Utils/VoxelGridFromLayers}/AREHS_Layer15.vtu (100%)
rename Tests/Data/{MeshLib => Utils/VoxelGridFromLayers}/AREHS_Layer17.vtu (100%)
rename Tests/Data/{MeshLib => Utils/VoxelGridFromLayers}/AREHS_Layer9.vtu (100%)
rename Tests/Data/{MeshLib => Utils/VoxelGridFromLayers}/AREHS_fault.vtu (100%)
rename Tests/Data/{MeshLib => Utils/VoxelGridFromLayers}/AREHS_test.vtu (100%)
rename Tests/Data/{MeshLib => Utils/VoxelGridFromLayers}/AREHS_test_fault.vtu (100%)
rename Tests/Data/{MeshLib => Utils/VoxelGridFromLayers}/AREHS_test_iso.vtu (100%)
rename Tests/Data/{MeshLib => Utils/VoxelGridFromLayers}/AREHS_test_layers.txt (100%)
create mode 100644 Tests/Data/Utils/VoxelGridFromLayers/test_voxelgrid_from_layers.py
diff --git a/Applications/Utils/Tests.cmake b/Applications/Utils/Tests.cmake
index 41281936309..5a109f848d6 100644
--- a/Applications/Utils/Tests.cmake
+++ b/Applications/Utils/Tests.cmake
@@ -1411,11 +1411,10 @@ endif()
AddTest(
NAME RemoveMeshElements_AABB_2D_regular
- PATH MeshLib
- WORKING_DIRECTORY ${Data_SOURCE_DIR}/MeshLib
+ PATH Utils/VoxelGridFromLayers
EXECUTABLE removeMeshElements
- EXECUTABLE_ARGS -i AREHS_Layer17.vtu
- -o ${Data_BINARY_DIR}/MeshLib/AREHS_2D_AABB_regular.vtu
+ EXECUTABLE_ARGS -i <SOURCE_PATH>/AREHS_Layer17.vtu
+ -o AREHS_2D_AABB_regular.vtu
--x-min 12000 --x-max 15000 --y-min 12000
REQUIREMENTS NOT (OGS_USE_MPI)
TESTER vtkdiff-mesh
@@ -1424,11 +1423,10 @@ AddTest(
AddTest(
NAME RemoveMeshElements_AABB_2D_inverted
- PATH MeshLib
- WORKING_DIRECTORY ${Data_SOURCE_DIR}/MeshLib
+ PATH Utils/VoxelGridFromLayers
EXECUTABLE removeMeshElements
- EXECUTABLE_ARGS -i AREHS_Layer17.vtu
- -o ${Data_BINARY_DIR}/MeshLib/AREHS_2D_AABB_inverted.vtu
+ EXECUTABLE_ARGS -i <SOURCE_PATH>/AREHS_Layer17.vtu
+ -o AREHS_2D_AABB_inverted.vtu
--x-min 12000 --x-max 15000 --y-min 12000 --invert
REQUIREMENTS NOT (OGS_USE_MPI)
TESTER vtkdiff-mesh
@@ -1437,11 +1435,10 @@ AddTest(
AddTest(
NAME RemoveMeshElements_AABB_3D_regular
- PATH MeshLib
- WORKING_DIRECTORY ${Data_SOURCE_DIR}/MeshLib
+ PATH Utils/VoxelGridFromLayers
EXECUTABLE removeMeshElements
- EXECUTABLE_ARGS -i AREHS_test.vtu
- -o ${Data_BINARY_DIR}/MeshLib/AREHS_3D_AABB_regular.vtu
+ EXECUTABLE_ARGS -i <SOURCE_PATH>/AREHS_test.vtu
+ -o AREHS_3D_AABB_regular.vtu
--x-min 12000 --x-max 15000 --y-min 12000 --z-min -3000 --z-max -2000
REQUIREMENTS NOT (OGS_USE_MPI)
TESTER vtkdiff-mesh
@@ -1450,11 +1447,10 @@ AddTest(
AddTest(
NAME RemoveMeshElements_AABB_3D_inverted
- PATH MeshLib
- WORKING_DIRECTORY ${Data_SOURCE_DIR}/MeshLib
+ PATH Utils/VoxelGridFromLayers
EXECUTABLE removeMeshElements
- EXECUTABLE_ARGS -i AREHS_test.vtu
- -o ${Data_BINARY_DIR}/MeshLib/AREHS_3D_AABB_inverted.vtu
+ EXECUTABLE_ARGS -i <SOURCE_PATH>/AREHS_test.vtu
+ -o AREHS_3D_AABB_inverted.vtu
--x-min 12000 --x-max 15000 --y-min 12000 --z-min -3000 --z-max -2000 --invert
REQUIREMENTS NOT (OGS_USE_MPI)
TESTER vtkdiff-mesh
diff --git a/Applications/Utils/VoxelGridFromLayers.smk b/Applications/Utils/VoxelGridFromLayers.smk
deleted file mode 100644
index c67ef318e9d..00000000000
--- a/Applications/Utils/VoxelGridFromLayers.smk
+++ /dev/null
@@ -1,70 +0,0 @@
-# Usage, e.g.:
-# snakemake -s VoxelGridFromLayers.smk -j 1 --configfile $HOME/code/ogs6/build/buildinfo.yaml
-#
-# buildinfo.yaml contains variables such as Data_BINARY_DIR
-
-import os
-os.environ["PATH"] += os.pathsep + os.pathsep.join([config['BIN_DIR']])
-workdir: f"{config['Data_SOURCE_DIR']}/MeshLib"
-out_dir = f"{config['Data_BINARY_DIR']}/MeshLib"
-
-rule all:
- input:
- f"{out_dir}/AREHS_test_diff_geometry.out",
- f"{out_dir}/AREHS_test_fault_diff.out",
- f"{out_dir}/AREHS_test_iso_diff_geometry.out"
-
-rule layers_to_grid:
- input:
- "AREHS_test_layers.txt"
- output:
- f"{out_dir}/AREHS_test.vtu"
- shell:
- "Layers2Grid -i {input} -o {output} -x 500 -y 300 -z 100"
-
-rule vtkdiff_grid_geometry:
- input:
- out = rules.layers_to_grid.output,
- ref = "AREHS_test.vtu"
- output:
- f"{out_dir}/AREHS_test_diff_geometry.out"
- shell:
- "vtkdiff -m {input.out} {input.ref} 2>&1 | tee {output}"
-
-rule add_fault_to_grid:
- input:
- grid = rules.layers_to_grid.output,
- fault = "AREHS_fault.vtu"
- output:
- f"{out_dir}/AREHS_test_fault.vtu"
- shell:
- "AddFaultToVoxelGrid -i {input.grid} -f {input.fault} -o {output}"
-
-rule vtkdiff_fault:
- input:
- a = rules.add_fault_to_grid.output,
- b = "AREHS_test_fault.vtu"
- output:
- f"{out_dir}/AREHS_test_fault_diff.out"
- params:
- check_mesh = True,
- fields = [["MaterialIDs", 0, 0]]
- wrapper:
- f"file://{config['SOURCE_DIR']}/scripts/snakemake/vtkdiff"
-
-rule layers_to_grid_iso:
- input:
- "AREHS_test_layers.txt"
- output:
- f"{out_dir}/AREHS_test_iso.vtu"
- shell:
- "Layers2Grid -i {input} -o {output} -x 500"
-
-rule vtkdiff_grid_iso_geometry:
- input:
- out = rules.layers_to_grid_iso.output,
- ref = "AREHS_test_iso.vtu"
- output:
- f"{out_dir}/AREHS_test_iso_diff_geometry.out"
- shell:
- "vtkdiff -m {input.out} {input.ref} 2>&1 | tee {output}"
diff --git a/Tests/Data/MeshLib/AREHS_2D_AABB_inverted.vtu b/Tests/Data/Utils/VoxelGridFromLayers/AREHS_2D_AABB_inverted.vtu
similarity index 100%
rename from Tests/Data/MeshLib/AREHS_2D_AABB_inverted.vtu
rename to Tests/Data/Utils/VoxelGridFromLayers/AREHS_2D_AABB_inverted.vtu
diff --git a/Tests/Data/MeshLib/AREHS_2D_AABB_regular.vtu b/Tests/Data/Utils/VoxelGridFromLayers/AREHS_2D_AABB_regular.vtu
similarity index 100%
rename from Tests/Data/MeshLib/AREHS_2D_AABB_regular.vtu
rename to Tests/Data/Utils/VoxelGridFromLayers/AREHS_2D_AABB_regular.vtu
diff --git a/Tests/Data/MeshLib/AREHS_3D_AABB_inverted.vtu b/Tests/Data/Utils/VoxelGridFromLayers/AREHS_3D_AABB_inverted.vtu
similarity index 100%
rename from Tests/Data/MeshLib/AREHS_3D_AABB_inverted.vtu
rename to Tests/Data/Utils/VoxelGridFromLayers/AREHS_3D_AABB_inverted.vtu
diff --git a/Tests/Data/MeshLib/AREHS_3D_AABB_regular.vtu b/Tests/Data/Utils/VoxelGridFromLayers/AREHS_3D_AABB_regular.vtu
similarity index 100%
rename from Tests/Data/MeshLib/AREHS_3D_AABB_regular.vtu
rename to Tests/Data/Utils/VoxelGridFromLayers/AREHS_3D_AABB_regular.vtu
diff --git a/Tests/Data/MeshLib/AREHS_Layer0.vtu b/Tests/Data/Utils/VoxelGridFromLayers/AREHS_Layer0.vtu
similarity index 100%
rename from Tests/Data/MeshLib/AREHS_Layer0.vtu
rename to Tests/Data/Utils/VoxelGridFromLayers/AREHS_Layer0.vtu
diff --git a/Tests/Data/MeshLib/AREHS_Layer15.vtu b/Tests/Data/Utils/VoxelGridFromLayers/AREHS_Layer15.vtu
similarity index 100%
rename from Tests/Data/MeshLib/AREHS_Layer15.vtu
rename to Tests/Data/Utils/VoxelGridFromLayers/AREHS_Layer15.vtu
diff --git a/Tests/Data/MeshLib/AREHS_Layer17.vtu b/Tests/Data/Utils/VoxelGridFromLayers/AREHS_Layer17.vtu
similarity index 100%
rename from Tests/Data/MeshLib/AREHS_Layer17.vtu
rename to Tests/Data/Utils/VoxelGridFromLayers/AREHS_Layer17.vtu
diff --git a/Tests/Data/MeshLib/AREHS_Layer9.vtu b/Tests/Data/Utils/VoxelGridFromLayers/AREHS_Layer9.vtu
similarity index 100%
rename from Tests/Data/MeshLib/AREHS_Layer9.vtu
rename to Tests/Data/Utils/VoxelGridFromLayers/AREHS_Layer9.vtu
diff --git a/Tests/Data/MeshLib/AREHS_fault.vtu b/Tests/Data/Utils/VoxelGridFromLayers/AREHS_fault.vtu
similarity index 100%
rename from Tests/Data/MeshLib/AREHS_fault.vtu
rename to Tests/Data/Utils/VoxelGridFromLayers/AREHS_fault.vtu
diff --git a/Tests/Data/MeshLib/AREHS_test.vtu b/Tests/Data/Utils/VoxelGridFromLayers/AREHS_test.vtu
similarity index 100%
rename from Tests/Data/MeshLib/AREHS_test.vtu
rename to Tests/Data/Utils/VoxelGridFromLayers/AREHS_test.vtu
diff --git a/Tests/Data/MeshLib/AREHS_test_fault.vtu b/Tests/Data/Utils/VoxelGridFromLayers/AREHS_test_fault.vtu
similarity index 100%
rename from Tests/Data/MeshLib/AREHS_test_fault.vtu
rename to Tests/Data/Utils/VoxelGridFromLayers/AREHS_test_fault.vtu
diff --git a/Tests/Data/MeshLib/AREHS_test_iso.vtu b/Tests/Data/Utils/VoxelGridFromLayers/AREHS_test_iso.vtu
similarity index 100%
rename from Tests/Data/MeshLib/AREHS_test_iso.vtu
rename to Tests/Data/Utils/VoxelGridFromLayers/AREHS_test_iso.vtu
diff --git a/Tests/Data/MeshLib/AREHS_test_layers.txt b/Tests/Data/Utils/VoxelGridFromLayers/AREHS_test_layers.txt
similarity index 100%
rename from Tests/Data/MeshLib/AREHS_test_layers.txt
rename to Tests/Data/Utils/VoxelGridFromLayers/AREHS_test_layers.txt
diff --git a/Tests/Data/Utils/VoxelGridFromLayers/test_voxelgrid_from_layers.py b/Tests/Data/Utils/VoxelGridFromLayers/test_voxelgrid_from_layers.py
new file mode 100644
index 00000000000..fb1e52650c1
--- /dev/null
+++ b/Tests/Data/Utils/VoxelGridFromLayers/test_voxelgrid_from_layers.py
@@ -0,0 +1,40 @@
+import os
+from pathlib import Path
+
+from ogs import cli
+
+
+def test_voxelgrid_from_layers(tmp_path):
+ os.chdir(Path(__file__).resolve().parent)
+
+ mesh_file = Path(f"{tmp_path}/AREHS_test.vtu")
+
+ cli.Layers2Grid(i="AREHS_test_layers.txt", o=mesh_file, x=500, y=300, z=100)
+ assert mesh_file.exists()
+
+ assert cli.vtkdiff(mesh_file, "AREHS_test.vtu", mesh_check=None) == 0
+
+ fault_mesh_file = Path(f"{tmp_path}/AREHS_test_fault.vtu")
+ cli.AddFaultToVoxelGrid(i=mesh_file, f="AREHS_fault.vtu", o=fault_mesh_file)
+ assert fault_mesh_file.exists()
+
+ assert cli.vtkdiff(fault_mesh_file, "AREHS_test_fault.vtu", mesh_check=None) == 0
+ assert (
+ cli.vtkdiff(
+ fault_mesh_file,
+ "AREHS_test_fault.vtu",
+ a="MaterialIDs",
+ b="MaterialIDs",
+ abs=0,
+ rel=0,
+ )
+ == 0
+ )
+
+ # iso
+ mesh_file = Path(f"{tmp_path}/AREHS_test_iso.vtu")
+
+ cli.Layers2Grid(i="AREHS_test_layers.txt", o=mesh_file, x=500)
+ assert mesh_file.exists()
+
+ assert cli.vtkdiff(mesh_file, "AREHS_test_iso.vtu", mesh_check=None) == 0
--
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