First part of refactorizations of time stepping algorithms

See merge request ogs/ogs!4134

[PL] TimeLoop refactorization; Extend ogs python interface

See merge request ogs/ogs!4133

Tom Fischer authored Apr 08, 2022 and Dmitry Yu. Naumov committed May 06, 2022

md rename timeloop::doTimestep

Refactored cpm offline cache handling

See merge request ogs/ogs!4137

[jupyter] Restored ipyvtklink and static PyVista rendering backend.

See merge request ogs/ogs!4135

Works only for bilke/ogs. Others can be added as well but may not
required.

Install also gmsh and python-gmsh conda packages.

[ci] Run jupyter tests in regular (osmesa) container.

Rendering backend can be set via:

    import pyvista as pv

    pv.set_jupyter_backend('ipyvtklink') # default
    pv.set_jupyter_backend('pythreejs')
    pv.set_jupyter_backend('static')

[PL/CT] chemical speciation parallelization

See merge request ogs/ogs!4106

[cpm] Removed MPI dependencies in vtk.

Closes #3289

See merge request ogs/ogs!4129

When using VTK_USE_MPI vtk enables its internal hdf5 which clashes with our hdf5 added via cpm.

Hdf 1.12.1

See merge request ogs/ogs!4114