From 03ea5a357ecc8d821078cbbcfb038ee6eeb46898 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Wed, 23 Dec 2015 17:34:45 +0100
Subject: [PATCH] gnu: Add seqPattern.
* gnu/packages/bioinformatics.scm (r-seqpattern): New variable.
---
gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9224abda195..f574bde9e74 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3886,6 +3886,32 @@ (define-public r-impute
microarray data, using nearest neighbor averaging.")
(license license:gpl2+)))
+(define-public r-seqpattern
+ (package
+ (name "r-seqpattern")
+ (version "1.2.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "seqPattern" version))
+ (sha256
+ (base32
+ "0p9zj6bic7sa0hb2bjm988kkk5n9r1kvlbqkzvy702f642n0j53i"))))
+ (properties
+ `((upstream-name . "seqPattern")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biostrings" ,r-biostrings)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-plotrix" ,r-plotrix)))
+ (home-page "http://bioconductor.org/packages/seqPattern")
+ (synopsis "Visualising oligonucleotide patterns and motif occurrences")
+ (description
+ "This package provides tools to visualize oligonucleotide patterns and
+sequence motif occurrences across a large set of sequences centred at a common
+reference point and sorted by a user defined feature.")
+ (license license:gpl3+)))
+
(define-public r-qtl
(package
(name "r-qtl")
--
GitLab