From 1e44cf8b0ffe88f2675718c0a0f5119c87a8bf6a Mon Sep 17 00:00:00 2001
From: Ben Woodcroft <b.woodcroft@uq.edu.au>
Date: Tue, 9 Jun 2015 16:10:51 +0200
Subject: [PATCH] gnu: Add OrfM.
* gnu/packages/bioinformatics.scm (orfm): New variable.
Signed-off-by: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
---
gnu/packages/bioinformatics.scm | 21 +++++++++++++++++++++
1 file changed, 21 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index df627fbe48b..7175ecf41db 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1101,6 +1101,27 @@ (define-public miso
that a read originated from a particular isoform.")
(license license:gpl2)))
+(define-public orfm
+ (package
+ (name "orfm")
+ (version "0.3.2")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://github.com/wwood/OrfM/releases/download/v"
+ version "/orfm-" version ".tar.gz"))
+ (sha256
+ (base32
+ "00jqvlspj9662ni9r4n1snxfnwkzc02i46g5nk1kwjshi6v3vgg3"))))
+ (build-system gnu-build-system)
+ (inputs `(("zlib" ,zlib)))
+ (synopsis "Simple and not slow open reading frame (ORF) caller")
+ (description
+ "An ORF caller finds stretches of DNA that when translated are not
+interrupted by stop codons. OrfM finds and prints these ORFs.")
+ (home-page "https://github.com/wwood/OrfM")
+ (license license:lgpl3+)))
+
(define-public python2-pbcore
(package
(name "python2-pbcore")
--
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