From 3546771cc8e5a24de89965e69f74c1d20027fefd Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Mon, 25 Nov 2019 10:55:01 +0200
Subject: [PATCH] gnu: libdivsufsort: Move to datastructures.scm.
* gnu/packages/bioinformatics.scm (libdivsufsort): Move to ...
* gnu/packages/datastructures.scm: ... here.
---
gnu/packages/bioinformatics.scm | 29 -----------------------------
gnu/packages/datastructures.scm | 31 ++++++++++++++++++++++++++++++-
2 files changed, 30 insertions(+), 30 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index beb442ebe04..616fcedc35a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11572,35 +11572,6 @@ (define-public libgff
dependency like SeqAn.")
(license (license:x11-style "https://www.boost.org/LICENSE_1_0.txt"))))
-(define-public libdivsufsort
- (package
- (name "libdivsufsort")
- (version "2.0.1")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/y-256/libdivsufsort.git")
- (commit version)))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "0fgdz9fzihlvjjrxy01md1bv9vh12rkgkwbm90b1hj5xpbaqp7z2"))))
- (build-system cmake-build-system)
- (arguments
- '(#:tests? #f ; there are no tests
- #:configure-flags
- ;; Needed for rapmap and sailfish.
- '("-DBUILD_DIVSUFSORT64=ON")))
- (home-page "https://github.com/y-256/libdivsufsort")
- (synopsis "Lightweight suffix-sorting library")
- (description "libdivsufsort is a software library that implements a
-lightweight suffix array construction algorithm. This library provides a
-simple and an efficient C API to construct a suffix array and a
-Burrows-Wheeler transformed string from a given string over a constant-size
-alphabet. The algorithm runs in O(n log n) worst-case time using only 5n+O(1)
-bytes of memory space, where n is the length of the string.")
- (license license:expat)))
-
(define-public sailfish
(package
(name "sailfish")
diff --git a/gnu/packages/datastructures.scm b/gnu/packages/datastructures.scm
index 7eab65fd5f6..3ead3ac2c48 100644
--- a/gnu/packages/datastructures.scm
+++ b/gnu/packages/datastructures.scm
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2015, 2016, 2019 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2015, 2016, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016, 2017, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018 Meiyo Peng <meiyo.peng@gmail.com>
;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il>
@@ -229,3 +229,32 @@ (define-public sdsl-lite
complexity of an operation performed on the classical data structure and the
equivalent succinct data structure are (most of the time) identical.")
(license license:gpl3+)))
+
+(define-public libdivsufsort
+ (package
+ (name "libdivsufsort")
+ (version "2.0.1")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/y-256/libdivsufsort.git")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0fgdz9fzihlvjjrxy01md1bv9vh12rkgkwbm90b1hj5xpbaqp7z2"))))
+ (build-system cmake-build-system)
+ (arguments
+ '(#:tests? #f ; there are no tests
+ #:configure-flags
+ ;; Needed for rapmap and sailfish.
+ '("-DBUILD_DIVSUFSORT64=ON")))
+ (home-page "https://github.com/y-256/libdivsufsort")
+ (synopsis "Lightweight suffix-sorting library")
+ (description "libdivsufsort is a software library that implements a
+lightweight suffix array construction algorithm. This library provides a
+simple and an efficient C API to construct a suffix array and a
+Burrows-Wheeler transformed string from a given string over a constant-size
+alphabet. The algorithm runs in O(n log n) worst-case time using only 5n+O(1)
+bytes of memory space, where n is the length of the string.")
+ (license license:expat)))
--
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