From 4702cec24637fc9cb5ed544817d56e9770b21ebf Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Mon, 4 May 2015 11:27:39 +0200
Subject: [PATCH] gnu: bamtools: Set rpath via LDFLAGS.
* gnu/packages/bioinformatics.scm (bamtools): Add a pre-configure phase
setting $LDFLAGS to set the rpath to $out/lib/bamtools.
---
gnu/packages/bioinformatics.scm | 12 +++++++++++-
1 file changed, 11 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8bc5b868ece..7dc1bc48ced 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -62,7 +62,17 @@ (define-public bamtools
(base32
"1brry29bw2xr2l9pqn240rkqwayg85b8qq78zk2zs6nlspk4d018"))))
(build-system cmake-build-system)
- (arguments `(#:tests? #f)) ;no "check" target
+ (arguments
+ `(#:tests? #f ;no "check" target
+ #:phases
+ (modify-phases %standard-phases
+ (add-before
+ 'configure 'set-ldflags
+ (lambda* (#:key outputs #:allow-other-keys)
+ (setenv "LDFLAGS"
+ (string-append
+ "-Wl,-rpath="
+ (assoc-ref outputs "out") "/lib/bamtools")))))))
(inputs `(("zlib" ,zlib)))
(home-page "https://github.com/pezmaster31/bamtools")
(synopsis "C++ API and command-line toolkit for working with BAM data")
--
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