From 48bcbef07a773ad4f0b8a07caec2ba1eb6b8bab0 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 17 Dec 2019 19:48:50 +0100
Subject: [PATCH] gnu: Add r-bioassayr.
* gnu/packages/bioconductor.scm (r-bioassayr): New variable.
---
gnu/packages/bioconductor.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 2423e74b3f9..0b3df4f59c5 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6893,3 +6893,36 @@ (define-public r-chemminer
visualization functions for compound clustering results and chemical
structures.")
(license license:artistic2.0)))
+
+(define-public r-bioassayr
+ (package
+ (name "r-bioassayr")
+ (version "1.24.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "bioassayR" version))
+ (sha256
+ (base32
+ "08vxkvxhqnryfbj4dwk3ifb9pn544www9zk2pj9fjbh5xfpwi7zw"))))
+ (properties `((upstream-name . "bioassayR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-chemminer" ,r-chemminer)
+ ("r-dbi" ,r-dbi)
+ ("r-matrix" ,r-matrix)
+ ("r-rjson" ,r-rjson)
+ ("r-rsqlite" ,r-rsqlite)
+ ("r-xml" ,r-xml)))
+ (home-page "https://github.com/TylerBackman/bioassayR")
+ (synopsis "Cross-target analysis of small molecule bioactivity")
+ (description
+ "bioassayR is a computational tool that enables simultaneous analysis of
+thousands of bioassay experiments performed over a diverse set of compounds
+and biological targets. Unique features include support for large-scale
+cross-target analyses of both public and custom bioassays, generation of
+@dfn{high throughput screening fingerprints} (HTSFPs), and an optional
+preloaded database that provides access to a substantial portion of publicly
+available bioactivity data.")
+ (license license:artistic2.0)))
--
GitLab