From 4aa7d592f18c690106b604029a884c0654795189 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 16 Jan 2017 12:19:28 +0100
Subject: [PATCH] gnu: Add r-mzid.
* gnu/packages/bioinformatics.scm (r-mzid): New variable.
---
gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 82a60dae05b..4952bbe339f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8363,3 +8363,33 @@ (define-public r-vsn
their variance is independent of the mean, and they are usually more sensitive
and specific in detecting differential transcription.")
(license license:artistic2.0)))
+
+(define-public r-mzid
+ (package
+ (name "r-mzid")
+ (version "1.12.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "mzID" version))
+ (sha256
+ (base32
+ "1zn896cpfvqp1qmq5c4vcj933hb8rxwb6gkck1wqvr7393rpqy1q"))))
+ (properties `((upstream-name . "mzID")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-doparallel" ,r-doparallel)
+ ("r-foreach" ,r-foreach)
+ ("r-iterators" ,r-iterators)
+ ("r-plyr" ,r-plyr)
+ ("r-protgenerics" ,r-protgenerics)
+ ("r-rcpp" ,r-rcpp)
+ ("r-xml" ,r-xml)))
+ (home-page "http://bioconductor.org/packages/mzID")
+ (synopsis "Parser for mzIdentML files")
+ (description
+ "This package provides a parser for mzIdentML files implemented using the
+XML package. The parser tries to be general and able to handle all types of
+mzIdentML files with the drawback of having less pretty output than a vendor
+specific parser.")
+ (license license:gpl2+)))
--
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