From 614a8977cbac1f7ac27a908764eeb5542f32e52e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Fri, 20 Nov 2015 15:14:55 +0100
Subject: [PATCH] gnu: ngs-java: Update to 1.2.2.
* gnu/packages/bioinformatics.scm (ngs-java): Update to 1.2.2.
[arguments]: Remove build phase "fix-java-symlink-installation".
---
gnu/packages/bioinformatics.scm | 22 ++--------------------
1 file changed, 2 insertions(+), 20 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 955aa48f554..017f233cba5 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2389,26 +2389,8 @@ (define-public ngs-java
(srfi srfi-26))
,@(package-arguments ngs-sdk))
((#:phases phases)
- `(alist-cons-after
- 'enter-dir 'fix-java-symlink-installation
- (lambda _
- ;; Only replace the version suffix, not the version number in
- ;; the directory name. Reported here:
- ;; https://github.com/ncbi/ngs/pull/4
- (substitute* "Makefile.java"
- (((string-append "\\$\\(subst "
- "(\\$\\(VERSION[^\\)]*\\)),"
- "(\\$\\([^\\)]+\\)),"
- "(\\$\\([^\\)]+\\)|\\$\\@)"
- "\\)")
- _ pattern replacement target)
- (string-append "$(patsubst "
- "%" pattern ","
- "%" replacement ","
- target ")"))))
- (alist-replace
- 'enter-dir (lambda _ (chdir "ngs-java") #t)
- ,phases))))))
+ `(modify-phases ,phases
+ (replace 'enter-dir (lambda _ (chdir "ngs-java") #t)))))))
(inputs
`(("jdk" ,icedtea6 "jdk")
("ngs-sdk" ,ngs-sdk)))
--
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