From 64efa3078a487a059ada076519d94411685727e9 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Mon, 23 May 2016 16:57:16 +0200
Subject: [PATCH] gnu: Add r-genomationdata.
* gnu/packages/bioinformatics.scm (r-genomationdata): New variable.
---
gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 11e74c6d2ce..94ae4455b82 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4776,6 +4776,34 @@ (define-public r-genomation
genomic intervals. In addition, it can use BAM or BigWig files as input.")
(license license:artistic2.0)))
+(define-public r-genomationdata
+ (package
+ (name "r-genomationdata")
+ (version "1.4.0")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "https://bioconductor.org/packages/"
+ "release/data/experiment/src/contrib/"
+ "genomationData_" version ".tar.gz"))
+ (sha256
+ (base32
+ "1xzq2j722d8lcn5bc3aq3yb34xwis2d0bpsf6jsq4xw1bg0bsy79"))))
+ (build-system r-build-system)
+ ;; As this package provides little more than large data files, it doesn't
+ ;; make sense to build substitutes.
+ (arguments `(#:substitutable? #f))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "http://bioinformatics.mdc-berlin.de/genomation/")
+ (synopsis "Experimental data for use with the genomation package")
+ (description
+ "This package contains experimental genetic data for use with the
+genomation package. Included are Chip Seq, Methylation and Cage data,
+downloaded from Encode.")
+ (license license:gpl3+)))
+
(define-public r-org-hs-eg-db
(package
(name "r-org-hs-eg-db")
--
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