From 9b6cddd32dfcffac4cec28366f968cfcce021e1e Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Mon, 18 Jan 2021 10:39:51 +0200
Subject: [PATCH] gnu: Add ruby-bio-vcf.
* gnu/packages/bioinformatics.scm (ruby-bio-vcf): New variable.
---
gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c527111928c..182e974efc6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7726,6 +7726,31 @@ (define-public bioruby
;; (LGPLv2.1+) and scripts in samples (which have GPL2 and GPL2+)
(license (list license:ruby license:lgpl2.1+ license:gpl2+ ))))
+(define-public ruby-bio-vcf
+ (package
+ (name "ruby-bio-vcf")
+ (version "0.9.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (rubygems-uri "bio-vcf" version))
+ (sha256
+ (base32
+ "1glw5pn9s8z13spxk6yyfqaz80n9lga67f33w35nkpq9dwi2vg6g"))))
+ (build-system ruby-build-system)
+ (native-inputs
+ `(("ruby-cucumber" ,ruby-cucumber)))
+ (synopsis "Smart VCF parser DSL")
+ (description
+ "Bio-vcf provides a @acronym{DSL, domain specific language} for processing
+the VCF format. Record named fields can be queried with regular expressions.
+Bio-vcf is a new generation VCF parser, filter and converter. Bio-vcf is not
+only very fast for genome-wide (WGS) data, it also comes with a filtering,
+evaluation and rewrite language and can output any type of textual data,
+including VCF header and contents in RDF and JSON.")
+ (home-page "https://github.com/vcflib/bio-vcf")
+ (license license:expat)))
+
(define-public r-biocviews
(package
(name "r-biocviews")
--
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