From bf159353376abe5177f336cbea56c94b72c89de8 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Fri, 18 Dec 2015 14:07:32 +0100
Subject: [PATCH] gnu: Add Biostrings.
* gnu/packages/bioinformatics.scm (r-biostrings): New variable.
---
gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8163d5cc54f..d379c4fe375 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3569,6 +3569,32 @@ (define-public r-biocparallel
objects.")
(license (list license:gpl2+ license:gpl3+))))
+(define-public r-biostrings
+ (package
+ (name "r-biostrings")
+ (version "2.38.2")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "Biostrings" version))
+ (sha256
+ (base32
+ "1afp9szc8ci6jn0m3hrrqh6df65cpw3v1dcnl6xir3d3m3lwwmk4"))))
+ (properties
+ `((upstream-name . "Biostrings")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-iranges" ,r-iranges)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-xvector" ,r-xvector)))
+ (home-page "http://bioconductor.org/packages/Biostrings")
+ (synopsis "String objects and algorithms for biological sequences")
+ (description
+ "This package provides memory efficient string containers, string
+matching algorithms, and other utilities, for fast manipulation of large
+biological sequences or sets of sequences.")
+ (license license:artistic2.0)))
+
(define-public r-qtl
(package
(name "r-qtl")
--
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