From c03cefc3d8dd826c4a74abbfe2b235525dca50fb Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 23 Jun 2020 13:42:02 +0200
Subject: [PATCH] gnu: Add r-kmer.
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* gnu/packages/cran.scm (r-kmer): New variable.
Co-authored-by: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
---
gnu/packages/cran.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index d07d63d4296..68af10f36b3 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -22299,3 +22299,27 @@ (define-public r-phylogram
range of object-specific analytical and tree-visualization functions found
across a wide array of bioinformatic R packages.")
(license license:gpl3)))
+
+(define-public r-kmer
+ (package
+ (name "r-kmer")
+ (version "1.1.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "kmer" version))
+ (sha256
+ (base32 "0jimn9r0abglwxdl1zqz0lxa99cmj6haydkxjzqfbpx9by80wnww"))))
+ (properties `((upstream-name . "kmer")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-openssl" ,r-openssl)
+ ("r-phylogram" ,r-phylogram)
+ ("r-rcpp" ,r-rcpp)))
+ (home-page "https://github.com/shaunpwilkinson/kmer/")
+ (synopsis "Fast K-Mer counting and clustering for biological sequence analysis")
+ (description
+ "@code{r-kmer} is an R package for rapidly computing distance matrices
+and clustering large sequence datasets using fast alignment-free k-mer
+counting and recursive k-means partitioning.")
+ (license license:gpl3)))
--
GitLab