From c373223e635cd8f5f2770dd0b05f3a310fc7f7dd Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Wed, 18 Dec 2019 15:24:13 +0100
Subject: [PATCH] gnu: Add r-graphite.
* gnu/packages/bioconductor.scm (r-graphite): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 2ca1679f8ba..89cdda25d96 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -7011,3 +7011,30 @@ (define-public r-biobroom
visualize bioinformatics analyses.")
;; Any version of the LGPL.
(license license:lgpl3+)))
+
+(define-public r-graphite
+ (package
+ (name "r-graphite")
+ (version "1.32.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "graphite" version))
+ (sha256
+ (base32
+ "1r9fk0cpdwm7012pa85dkjcpkml2j89zcznpf4hfdz66anfyyycd"))))
+ (properties `((upstream-name . "graphite")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-checkmate" ,r-checkmate)
+ ("r-graph" ,r-graph)
+ ("r-httr" ,r-httr)
+ ("r-rappdirs" ,r-rappdirs)))
+ (home-page "https://bioconductor.org/packages/graphite/")
+ (synopsis "Networks from pathway databases")
+ (description
+ "Graphite provides networks derived from eight public pathway databases,
+and automates the conversion of node identifiers (e.g. from Entrez IDs to gene
+symbols).")
+ (license license:agpl3+)))
--
GitLab