From c827f2028629c43f73aee99600d34fc97fca4208 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 24 Nov 2016 15:22:03 +0100
Subject: [PATCH] gnu: Add r-chipkernels.
* gnu/packages/bioinformatics.scm (r-chipkernels): New variable.
---
gnu/packages/bioinformatics.scm | 36 +++++++++++++++++++++++++++++++++
1 file changed, 36 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0b10b1b6e7e..73e1d09b89a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7577,6 +7577,42 @@ (define-public r-wgcna
data manipulation and visualization.")
(license license:gpl2+)))
+(define-public r-chipkernels
+ (let ((commit "c9cfcacb626b1221094fb3490ea7bac0fd625372")
+ (revision "1"))
+ (package
+ (name "r-chipkernels")
+ (version (string-append "1.1-" revision "." (string-take commit 9)))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/ManuSetty/ChIPKernels.git")
+ (commit commit)))
+ (file-name (string-append name "-" version))
+ (sha256
+ (base32
+ "14bj5qhjm1hsm9ay561nfbqi9wxsa7y487df2idsaaf6z10nw4v0"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-iranges" ,r-iranges)
+ ("r-xvector" ,r-xvector)
+ ("r-biostrings" ,r-biostrings)
+ ("r-bsgenome" ,r-bsgenome)
+ ("r-gtools" ,r-gtools)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-sfsmisc" ,r-sfsmisc)
+ ("r-kernlab" ,r-kernlab)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-biocgenerics" ,r-biocgenerics)))
+ (home-page "https://github.com/ManuSetty/ChIPKernels")
+ (synopsis "Build string kernels for DNA Sequence analysis")
+ (description "ChIPKernels is an R package for building different string
+kernels used for DNA Sequence analysis. A dictionary of the desired kernel
+must be built and this dictionary can be used for determining kernels for DNA
+Sequences.")
+ (license license:gpl2+))))
+
(define-public emboss
(package
(name "emboss")
--
GitLab