From d4af25b51bbe9980340d70ae103ec92a284e69ce Mon Sep 17 00:00:00 2001
From: Raoul Jean Pierre Bonnal <ilpuccio.febo@gmail.com>
Date: Tue, 27 Dec 2016 22:11:28 +0100
Subject: [PATCH] gnu: Add r-tximport.
---
gnu/packages/bioinformatics.scm | 22 ++++++++++++++++++++++
1 file changed, 22 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c605c58ea6e..f8f6ea1ee78 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7800,6 +7800,28 @@ (define-public r-gkmsvm
kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.")
(license license:gpl2+)))
+(define-public r-tximport
+ (package
+ (name "r-tximport")
+ (version "1.2.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "tximport" version))
+ (sha256
+ (base32
+ "1k5a7dad6zqg936s17f6cmwgqp11x24z9zhxndsgwbscgpyhpcb0"))))
+ (build-system r-build-system)
+ (home-page "http://bioconductor.org/packages/tximport")
+ (synopsis "Import and summarize transcript-level estimates for gene-level analysis")
+ (description
+ "This package provides tools to import transcript-level abundance,
+estimated counts and transcript lengths, and to summarize them into matrices
+for use with downstream gene-level analysis packages. Average transcript
+length, weighted by sample-specific transcript abundance estimates, is
+provided as a matrix which can be used as an offset for different expression
+of gene-level counts.")
+ (license license:gpl2+)))
+
(define-public emboss
(package
(name "emboss")
--
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