diff --git a/emacs/guix-base.el b/emacs/guix-base.el
index a479f6dbf5a008cf43a55da254325a54e602245e..685e4498d8c15dbf68ab00601ac14d4b31ea2a7c 100644
--- a/emacs/guix-base.el
+++ b/emacs/guix-base.el
@@ -1134,9 +1134,12 @@ The function is called with a single argument - a command line string."
 
 (defun guix-command-output (args)
   "Return string with 'guix ARGS ...' output."
-  (guix-eval-read
-   (apply #'guix-make-guile-expression
-          'guix-command-output args)))
+  (cl-multiple-value-bind (output error)
+      (guix-eval (apply #'guix-make-guile-expression
+                        'guix-command-output args))
+    ;; Remove trailing new space from the error string.
+    (message (replace-regexp-in-string "\n\\'" "" (read error)))
+    (read output)))
 
 (defun guix-help-string (&optional commands)
   "Return string with 'guix COMMANDS ... --help' output."
diff --git a/emacs/guix-main.scm b/emacs/guix-main.scm
index c9b84d36d9b270cc6542c008ff4ee5de4d5c436d..e29a0a0accf96bd1f8f9fcd0017564ccd2b12b15 100644
--- a/emacs/guix-main.scm
+++ b/emacs/guix-main.scm
@@ -71,6 +71,18 @@ (define-syntax-rule (first-or-false lst)
 (define (list-maybe obj)
   (if (list? obj) obj (list obj)))
 
+(define (output+error thunk)
+  "Call THUNK and return 2 values: output and error output as strings."
+  (let ((output-port (open-output-string))
+        (error-port  (open-output-string)))
+    (with-output-to-port output-port
+      (lambda () (with-error-to-port error-port thunk)))
+    (let ((strings (list (get-output-string output-port)
+                         (get-output-string error-port))))
+      (close-output-port output-port)
+      (close-output-port error-port)
+      (apply values strings))))
+
 (define (full-name->name+version spec)
   "Given package specification SPEC with or without output,
 return two values: name and version.  For example, for SPEC
@@ -953,9 +965,11 @@ (define (guix-command . args)
     (const #t)))
 
 (define (guix-command-output . args)
-  "Return string with 'guix ARGS ...' output."
-  (with-output-to-string
-    (lambda () (apply guix-command args))))
+  "Return 2 strings with 'guix ARGS ...' output and error output."
+  (output+error
+   (lambda ()
+     (parameterize ((guix-warning-port (current-error-port)))
+       (apply guix-command args)))))
 
 (define (help-string . commands)
   "Return string with 'guix COMMANDS ... --help' output."