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[UnitTest] Fixed the bug in NumLibNaturalCoordinates

wenqing requested to merge wenqing/ogs:fix_unit_test into master

This MR fixes partially the issue #3205 (closed).

  1. Feature description was added to the changelog
  2. Tests covering your feature were added?
  3. Any new feature or behavior change was documented?
Edited by Dmitry Yu. Naumov

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