From ef5a3640653d33b40e7d341d9261eea26a651efa Mon Sep 17 00:00:00 2001
From: aheinri5 <Anna@netzkritzler.de>
Date: Fri, 25 Dec 2020 21:17:26 +0100
Subject: [PATCH] [base] NAMESPACE, DESCRIPTION and doc cleanup
---
.gitignore | 1 -
DESCRIPTION | 5 ++++-
NAMESPACE | 57 -----------------------------------------------------
man/OGS6.Rd | 11 +++++++++--
4 files changed, 13 insertions(+), 61 deletions(-)
delete mode 100644 NAMESPACE
diff --git a/.gitignore b/.gitignore
index c828c93..01306d4 100644
--- a/.gitignore
+++ b/.gitignore
@@ -3,5 +3,4 @@
.RData
.Ruserdata
packrat/lib*/
-packrat/src/
inst/doc
diff --git a/DESCRIPTION b/DESCRIPTION
index f407eb9..87faf07 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -37,6 +37,9 @@ Imports:
curl,
xtable,
dplyr,
- rlang
+ rlang,
+ doParallel
RoxygenNote: 7.1.1
VignetteBuilder: knitr
+Depends:
+ foreach
diff --git a/NAMESPACE b/NAMESPACE
deleted file mode 100644
index fc47916..0000000
--- a/NAMESPACE
+++ /dev/null
@@ -1,57 +0,0 @@
-# Generated by roxygen2: do not edit by hand
-
-export(OGS6)
-export(OGS6_Chain)
-export(OGS6_Ensemble)
-export(OGS6_UnstructuredGrid)
-export(OGS6_mesh)
-export(generate_benchmark_script)
-export(generate_structured_mesh)
-export(pick_vtu_file)
-export(r2ogs6_borehole_heat_exchanger)
-export(r2ogs6_boundary_condition)
-export(r2ogs6_capillary_pressure)
-export(r2ogs6_chemical_system)
-export(r2ogs6_com_property)
-export(r2ogs6_component)
-export(r2ogs6_convergence_criterion)
-export(r2ogs6_curve)
-export(r2ogs6_deactivated_subdomain)
-export(r2ogs6_eigen)
-export(r2ogs6_flow_and_temperature_control)
-export(r2ogs6_fluid)
-export(r2ogs6_fracture_model)
-export(r2ogs6_fracture_properties)
-export(r2ogs6_global_process_coupling)
-export(r2ogs6_gml)
-export(r2ogs6_insitu)
-export(r2ogs6_jacobian_assembler)
-export(r2ogs6_kinetic_reactant)
-export(r2ogs6_linear_solver)
-export(r2ogs6_local_coordinate_system)
-export(r2ogs6_material_property)
-export(r2ogs6_medium)
-export(r2ogs6_nonlinear_solver)
-export(r2ogs6_output)
-export(r2ogs6_parameter)
-export(r2ogs6_ph_property)
-export(r2ogs6_phase)
-export(r2ogs6_phase_component)
-export(r2ogs6_phasefield_parameters)
-export(r2ogs6_pipes)
-export(r2ogs6_porous_medium)
-export(r2ogs6_pr_property)
-export(r2ogs6_process)
-export(r2ogs6_process_variable)
-export(r2ogs6_rate)
-export(r2ogs6_search_length_algorithm)
-export(r2ogs6_solution)
-export(r2ogs6_source_term)
-export(r2ogs6_time_loop)
-export(r2ogs6_time_stepping)
-export(r2ogs6_tl_process)
-export(r2ogs6_vtkdiff)
-export(read_in_gml)
-export(read_in_prj)
-export(read_in_vtu)
-export(run_simulation)
diff --git a/man/OGS6.Rd b/man/OGS6.Rd
index f99e587..58f618b 100644
--- a/man/OGS6.Rd
+++ b/man/OGS6.Rd
@@ -346,11 +346,18 @@ Adds a r2ogs6_insitu object
\subsection{Method \code{get_status()}}{
Checks if the OGS6 object has all necessary parameters for
starting a simulation
-print_log
\subsection{Usage}{
-\if{html}{\out{<div class="r">}}\preformatted{OGS6$get_status()}\if{html}{\out{</div>}}
+\if{html}{\out{<div class="r">}}\preformatted{OGS6$get_status(print_status = TRUE)}\if{html}{\out{</div>}}
}
+\subsection{Arguments}{
+\if{html}{\out{<div class="arguments">}}
+\describe{
+\item{\code{print_status}}{flag: Should the status be printed to the console?
+print_log}
+}
+\if{html}{\out{</div>}}
+}
}
\if{html}{\out{<hr>}}
\if{html}{\out{<a id="method-print_log"></a>}}
--
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