[tests] include BiocManager installation for pipeline

1 job for !34 with 52-class-to-read-ogs-output-in-hdf5-format in 2 minutes (queued for 11 seconds)
detached
Status Name Job ID Coverage
  Test
failed test #137973
envinf2

00:02:00

 
Name Stage Failure
failed
test Test
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> withr::with_libpaths(new = Sys.getenv("R_LIBS_USER"), {install.packages("BiocManager"); BiocManager::install("rhdf5")}
+
+ Error: unexpected end of input
Execution halted
Cleaning up project directory and file based variables
ERROR: Job failed: exit code 1