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Use local information for base node conditions

See merge request ogs/ogs!3786

Small code improvements - mainly removing unnecessary includes

See merge request ogs/ogs!3789

[MeL/Mesh]  Improves the memory footprint of the mesh.

See merge request ogs/ogs!3785

Fixes #3196.

RM Test: slightly change threshold for saturation

See merge request ogs/ogs!3787

The connection information can be computed
on the fly required.

Rename setNodesConnectedByElements to
calculateNodesConnectedByElements and make it a free
function. This 'out sourcing' makes it possible to
compute the connection information only when it is
required.

Phase field-AT1

See merge request ogs/ogs!3779

[ci] Catch undocumented parameter in Doxygen output.

See merge request ogs/ogs!3784

Will mark the job as yellow.

TH2M - Ideal gas law compression benchmark

See merge request ogs/ogs!3766

[MeL/IO] HDF5 - Types of Application I/O to Parallel File Systems

See merge request ogs/ogs!3764

[cmake] RPATH fixes

Closes #3189

See merge request ogs/ogs!3782

Confined compression of a cube, temperature and pressure follow ideal gas law, checks for energy and mass balances.

Th2m fix composition output

See merge request ogs/ogs!3682

TH2M: Switch to constant solid volume fraction

See merge request ogs/ogs!3777

Updating the results of failed ctests.

[Test/HT] Increased the tolerance pf the linear solver for H in 2D_ThermalConvection_constviscosityStaggeredScheme

Closes #3125

See merge request ogs/ogs!3778

[PL] Create ip-writer callback in ctor.

See merge request ogs/ogs!3774

Use compile time known sizes for rotations.

See merge request ogs/ogs!3705