From c18a0f6c3124200ded0386655a0a6b8e64fa2dfb Mon Sep 17 00:00:00 2001
From: Tobias Meisel <tobias.meisel@ufz.de>
Date: Mon, 26 Oct 2020 15:12:12 +0100
Subject: [PATCH] [T] Add test data for xdmf output
---
.../FunctionParameterTest_XDMF.prj | 186 ++++++++++++++++++
.../XDMF/FunctionParameterTest_XDMF.prj | 186 ++++++++++++++++++
.../XDMF/square_5x5_tris_32.vtu | Bin 0 -> 4038 bytes
.../XDMF/square_5x5_tris_32_left_boundary.vtu | 51 +++++
...5_tris_32_left_boundary_ts_0_t_0.000000.h5 | Bin 0 -> 800 bytes
...tris_32_left_boundary_ts_0_t_0.000000.xdmf | 19 ++
...5_tris_32_left_boundary_ts_1_t_1.000000.h5 | Bin 0 -> 800 bytes
...tris_32_left_boundary_ts_1_t_1.000000.xdmf | 19 ++
.../square_5x5_tris_32_right_boundary.vtu | 51 +++++
..._tris_32_right_boundary_ts_0_t_0.000000.h5 | Bin 0 -> 800 bytes
...ris_32_right_boundary_ts_0_t_0.000000.xdmf | 19 ++
..._tris_32_right_boundary_ts_1_t_1.000000.h5 | Bin 0 -> 800 bytes
...ris_32_right_boundary_ts_1_t_1.000000.xdmf | 19 ++
.../square_5x5_tris_32_ts_0_t_0.000000.xdmf | 28 +++
.../square_5x5_tris_32_ts_1_t_1.000000.xdmf | 28 +++
15 files changed, 606 insertions(+)
create mode 100644 Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/FunctionParameterTest_XDMF.prj
create mode 100644 Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/FunctionParameterTest_XDMF.prj
create mode 100644 Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32.vtu
create mode 100644 Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_left_boundary.vtu
create mode 100644 Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_left_boundary_ts_0_t_0.000000.h5
create mode 100644 Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_left_boundary_ts_0_t_0.000000.xdmf
create mode 100644 Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_left_boundary_ts_1_t_1.000000.h5
create mode 100644 Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_left_boundary_ts_1_t_1.000000.xdmf
create mode 100644 Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_right_boundary.vtu
create mode 100644 Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_right_boundary_ts_0_t_0.000000.h5
create mode 100644 Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_right_boundary_ts_0_t_0.000000.xdmf
create mode 100644 Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_right_boundary_ts_1_t_1.000000.h5
create mode 100644 Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_right_boundary_ts_1_t_1.000000.xdmf
create mode 100644 Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_ts_0_t_0.000000.xdmf
create mode 100644 Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_ts_1_t_1.000000.xdmf
diff --git a/Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/FunctionParameterTest_XDMF.prj b/Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/FunctionParameterTest_XDMF.prj
new file mode 100644
index 00000000000..929e7f6369b
--- /dev/null
+++ b/Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/FunctionParameterTest_XDMF.prj
@@ -0,0 +1,186 @@
+<?xml version="1.0" encoding="ISO-8859-1"?>
+<!-- Almost same as FunctionParameterTest - changed XDMF output and
+boundary meshes will be written as well -->
+<OpenGeoSysProject>
+ <meshes>
+ <mesh>square_5x5_tris_32.vtu</mesh>
+ <mesh>square_5x5_tris_32_left_boundary.vtu</mesh>
+ <mesh>square_5x5_tris_32_right_boundary.vtu</mesh>
+ </meshes>
+ <processes>
+ <process>
+ <name>LiquidFlow</name>
+ <type>LIQUID_FLOW</type>
+ <integration_order>2</integration_order>
+ <darcy_gravity>
+ <axis_id>1</axis_id>
+ <g>0</g>
+ </darcy_gravity>
+ <process_variables>
+ <process_variable>pressure</process_variable>
+ </process_variables>
+ <secondary_variables>
+ <secondary_variable internal_name="darcy_velocity" output_name="v"/>
+ </secondary_variables>
+ </process>
+ </processes>
+ <media>
+ <medium id="0">
+ <phases>
+ <phase>
+ <type>AqueousLiquid</type>
+ <properties>
+ <property>
+ <name>viscosity</name>
+ <type>Constant</type>
+ <value> 0.0011373 </value>
+ </property>
+ <property>
+ <name>density</name>
+ <type>Constant</type>
+ <value> 1000 </value>
+ </property>
+ </properties>
+ </phase>
+ </phases>
+ <properties>
+ <property>
+ <name>permeability</name>
+ <type>Constant</type>
+ <value>3.2439e-12</value>
+ </property>
+ <property>
+ <name>reference_temperature</name>
+ <type>Constant</type>
+ <value>293.15</value>
+ </property>
+ <property>
+ <name>porosity</name>
+ <type>Constant</type>
+ <value>0.17</value>
+ </property>
+ <property>
+ <name>storage</name>
+ <type>Constant</type>
+ <value> 0.0 </value>
+ </property>
+ </properties>
+ </medium>
+ </media>
+ <parameters>
+ <parameter>
+ <name>p_0</name>
+ <type>Function</type>
+ <expression>z</expression>
+ </parameter>
+ <parameter>
+ <name>p_polyline_left</name>
+ <type>Function</type>
+ <expression>x+1</expression>
+ </parameter>
+ <parameter>
+ <name>p_polyline_right</name>
+ <type>Function</type>
+ <expression>x-5</expression>
+ </parameter>
+ </parameters>
+ <process_variables>
+ <process_variable>
+ <name>pressure</name>
+ <order>1</order>
+ <components>1</components>
+ <initial_condition>p_0</initial_condition>
+ <boundary_conditions>
+ <boundary_condition>
+ <type>Dirichlet</type>
+ <mesh>square_5x5_tris_32_left_boundary</mesh>
+ <parameter>p_polyline_left</parameter>
+ </boundary_condition>
+ <boundary_condition>
+ <type>Dirichlet</type>
+ <mesh>square_5x5_tris_32_right_boundary</mesh>
+ <parameter>p_polyline_right</parameter>
+ </boundary_condition>
+ </boundary_conditions>
+ </process_variable>
+ </process_variables>
+ <time_loop>
+ <processes>
+ <process ref="LiquidFlow">
+ <nonlinear_solver>basic_picard</nonlinear_solver>
+ <convergence_criterion>
+ <type>DeltaX</type>
+ <norm_type>NORM2</norm_type>
+ <abstol>1.e-6</abstol>
+ </convergence_criterion>
+ <time_discretization>
+ <type>BackwardEuler</type>
+ </time_discretization>
+ <time_stepping>
+ <type>FixedTimeStepping</type>
+ <t_initial> 0 </t_initial>
+ <t_end> 1 </t_end>
+ <timesteps>
+ <pair>
+ <repeat>1</repeat>
+ <delta_t>1</delta_t>
+ </pair>
+ </timesteps>
+ </time_stepping>
+ </process>
+ </processes>
+ <output>
+ <type>XDMF</type>
+ <prefix>{:meshname}</prefix>
+ <suffix>_ts_{:timestep}_t_{:time}</suffix>
+ <meshes>
+ <mesh>square_5x5_tris_32</mesh>
+ <mesh>square_5x5_tris_32_left_boundary</mesh>
+ <mesh>square_5x5_tris_32_right_boundary</mesh>
+ </meshes>
+ <timesteps>
+ <pair>
+ <repeat>1</repeat>
+ <each_steps>1</each_steps>
+ </pair>
+ </timesteps>
+ <output_iteration_results>false</output_iteration_results>
+ <variables>
+ <variable> pressure </variable>
+ <variable> v </variable>
+ </variables>
+ </output>
+ </time_loop>
+ <nonlinear_solvers>
+ <nonlinear_solver>
+ <name>basic_picard</name>
+ <type>Picard</type>
+ <max_iter>10</max_iter>
+ <linear_solver>general_linear_solver</linear_solver>
+ </nonlinear_solver>
+ </nonlinear_solvers>
+ <linear_solvers>
+ <linear_solver>
+ <name>general_linear_solver</name>
+ <lis>-i cg -p jacobi -tol 1e-15 -maxiter 10000</lis>
+ <eigen>
+ <solver_type>BiCGSTAB</solver_type>
+ <precon_type>DIAGONAL</precon_type>
+ <max_iteration_step>1000</max_iteration_step>
+ <error_tolerance>1e-16</error_tolerance>
+ </eigen>
+ <petsc>
+ <prefix>lf</prefix>
+ <parameters>-lf_ksp_type cg -lf_pc_type bjacobi -lf_ksp_rtol 1e-16 -lf_ksp_max_it 10000</parameters>
+ </petsc>
+ </linear_solver>
+ </linear_solvers>
+ <test_definition>
+ <vtkdiff>
+ <regex>square_5x5_tris_32_ts_1_t_1.000000.vtu</regex>
+ <field>pressure</field>
+ <absolute_tolerance>1e-15</absolute_tolerance>
+ <relative_tolerance>1e-14</relative_tolerance>
+ </vtkdiff>
+ </test_definition>
+</OpenGeoSysProject>
diff --git a/Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/FunctionParameterTest_XDMF.prj b/Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/FunctionParameterTest_XDMF.prj
new file mode 100644
index 00000000000..929e7f6369b
--- /dev/null
+++ b/Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/FunctionParameterTest_XDMF.prj
@@ -0,0 +1,186 @@
+<?xml version="1.0" encoding="ISO-8859-1"?>
+<!-- Almost same as FunctionParameterTest - changed XDMF output and
+boundary meshes will be written as well -->
+<OpenGeoSysProject>
+ <meshes>
+ <mesh>square_5x5_tris_32.vtu</mesh>
+ <mesh>square_5x5_tris_32_left_boundary.vtu</mesh>
+ <mesh>square_5x5_tris_32_right_boundary.vtu</mesh>
+ </meshes>
+ <processes>
+ <process>
+ <name>LiquidFlow</name>
+ <type>LIQUID_FLOW</type>
+ <integration_order>2</integration_order>
+ <darcy_gravity>
+ <axis_id>1</axis_id>
+ <g>0</g>
+ </darcy_gravity>
+ <process_variables>
+ <process_variable>pressure</process_variable>
+ </process_variables>
+ <secondary_variables>
+ <secondary_variable internal_name="darcy_velocity" output_name="v"/>
+ </secondary_variables>
+ </process>
+ </processes>
+ <media>
+ <medium id="0">
+ <phases>
+ <phase>
+ <type>AqueousLiquid</type>
+ <properties>
+ <property>
+ <name>viscosity</name>
+ <type>Constant</type>
+ <value> 0.0011373 </value>
+ </property>
+ <property>
+ <name>density</name>
+ <type>Constant</type>
+ <value> 1000 </value>
+ </property>
+ </properties>
+ </phase>
+ </phases>
+ <properties>
+ <property>
+ <name>permeability</name>
+ <type>Constant</type>
+ <value>3.2439e-12</value>
+ </property>
+ <property>
+ <name>reference_temperature</name>
+ <type>Constant</type>
+ <value>293.15</value>
+ </property>
+ <property>
+ <name>porosity</name>
+ <type>Constant</type>
+ <value>0.17</value>
+ </property>
+ <property>
+ <name>storage</name>
+ <type>Constant</type>
+ <value> 0.0 </value>
+ </property>
+ </properties>
+ </medium>
+ </media>
+ <parameters>
+ <parameter>
+ <name>p_0</name>
+ <type>Function</type>
+ <expression>z</expression>
+ </parameter>
+ <parameter>
+ <name>p_polyline_left</name>
+ <type>Function</type>
+ <expression>x+1</expression>
+ </parameter>
+ <parameter>
+ <name>p_polyline_right</name>
+ <type>Function</type>
+ <expression>x-5</expression>
+ </parameter>
+ </parameters>
+ <process_variables>
+ <process_variable>
+ <name>pressure</name>
+ <order>1</order>
+ <components>1</components>
+ <initial_condition>p_0</initial_condition>
+ <boundary_conditions>
+ <boundary_condition>
+ <type>Dirichlet</type>
+ <mesh>square_5x5_tris_32_left_boundary</mesh>
+ <parameter>p_polyline_left</parameter>
+ </boundary_condition>
+ <boundary_condition>
+ <type>Dirichlet</type>
+ <mesh>square_5x5_tris_32_right_boundary</mesh>
+ <parameter>p_polyline_right</parameter>
+ </boundary_condition>
+ </boundary_conditions>
+ </process_variable>
+ </process_variables>
+ <time_loop>
+ <processes>
+ <process ref="LiquidFlow">
+ <nonlinear_solver>basic_picard</nonlinear_solver>
+ <convergence_criterion>
+ <type>DeltaX</type>
+ <norm_type>NORM2</norm_type>
+ <abstol>1.e-6</abstol>
+ </convergence_criterion>
+ <time_discretization>
+ <type>BackwardEuler</type>
+ </time_discretization>
+ <time_stepping>
+ <type>FixedTimeStepping</type>
+ <t_initial> 0 </t_initial>
+ <t_end> 1 </t_end>
+ <timesteps>
+ <pair>
+ <repeat>1</repeat>
+ <delta_t>1</delta_t>
+ </pair>
+ </timesteps>
+ </time_stepping>
+ </process>
+ </processes>
+ <output>
+ <type>XDMF</type>
+ <prefix>{:meshname}</prefix>
+ <suffix>_ts_{:timestep}_t_{:time}</suffix>
+ <meshes>
+ <mesh>square_5x5_tris_32</mesh>
+ <mesh>square_5x5_tris_32_left_boundary</mesh>
+ <mesh>square_5x5_tris_32_right_boundary</mesh>
+ </meshes>
+ <timesteps>
+ <pair>
+ <repeat>1</repeat>
+ <each_steps>1</each_steps>
+ </pair>
+ </timesteps>
+ <output_iteration_results>false</output_iteration_results>
+ <variables>
+ <variable> pressure </variable>
+ <variable> v </variable>
+ </variables>
+ </output>
+ </time_loop>
+ <nonlinear_solvers>
+ <nonlinear_solver>
+ <name>basic_picard</name>
+ <type>Picard</type>
+ <max_iter>10</max_iter>
+ <linear_solver>general_linear_solver</linear_solver>
+ </nonlinear_solver>
+ </nonlinear_solvers>
+ <linear_solvers>
+ <linear_solver>
+ <name>general_linear_solver</name>
+ <lis>-i cg -p jacobi -tol 1e-15 -maxiter 10000</lis>
+ <eigen>
+ <solver_type>BiCGSTAB</solver_type>
+ <precon_type>DIAGONAL</precon_type>
+ <max_iteration_step>1000</max_iteration_step>
+ <error_tolerance>1e-16</error_tolerance>
+ </eigen>
+ <petsc>
+ <prefix>lf</prefix>
+ <parameters>-lf_ksp_type cg -lf_pc_type bjacobi -lf_ksp_rtol 1e-16 -lf_ksp_max_it 10000</parameters>
+ </petsc>
+ </linear_solver>
+ </linear_solvers>
+ <test_definition>
+ <vtkdiff>
+ <regex>square_5x5_tris_32_ts_1_t_1.000000.vtu</regex>
+ <field>pressure</field>
+ <absolute_tolerance>1e-15</absolute_tolerance>
+ <relative_tolerance>1e-14</relative_tolerance>
+ </vtkdiff>
+ </test_definition>
+</OpenGeoSysProject>
diff --git a/Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32.vtu b/Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32.vtu
new file mode 100644
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diff --git a/Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_left_boundary.vtu b/Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_left_boundary.vtu
new file mode 100644
index 00000000000..52b20854c8f
--- /dev/null
+++ b/Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_left_boundary.vtu
@@ -0,0 +1,51 @@
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+ </DataArray>
+ </PointData>
+ <CellData Scalars="bulk_element_ids">
+ <DataArray type="UInt64" IdType="1" Name="bulk_element_ids" format="ascii" RangeMin="0" RangeMax="24">
+ 0 8 16 24
+ </DataArray>
+ </CellData>
+ <Points>
+ <DataArray type="Float64" Name="Points" NumberOfComponents="3" format="ascii" RangeMin="0" RangeMax="5">
+ 0 1.25 3 0 0 3
+ 0 2.5 3 0 3.75 3
+ 0 5 3
+ <InformationKey name="L2_NORM_RANGE" location="vtkDataArray" length="2">
+ <Value index="0">
+ 0
+ </Value>
+ <Value index="1">
+ 5
+ </Value>
+ </InformationKey>
+ <InformationKey name="L2_NORM_FINITE_RANGE" location="vtkDataArray" length="2">
+ <Value index="0">
+ 0
+ </Value>
+ <Value index="1">
+ 5
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+ </DataArray>
+ </Points>
+ <Cells>
+ <DataArray type="Int64" Name="connectivity" format="ascii" RangeMin="0" RangeMax="4">
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+ <DataArray type="Int64" Name="offsets" format="ascii" RangeMin="2" RangeMax="8">
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+ <DataArray type="UInt8" Name="types" format="ascii" RangeMin="3" RangeMax="3">
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+ </Cells>
+ </Piece>
+ </UnstructuredGrid>
+</VTKFile>
diff --git a/Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_left_boundary_ts_0_t_0.000000.h5 b/Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_left_boundary_ts_0_t_0.000000.h5
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diff --git a/Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_left_boundary_ts_0_t_0.000000.xdmf b/Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_left_boundary_ts_0_t_0.000000.xdmf
new file mode 100644
index 00000000000..4b083795314
--- /dev/null
+++ b/Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_left_boundary_ts_0_t_0.000000.xdmf
@@ -0,0 +1,19 @@
+<?xml version="1.0" encoding="utf-8"?>
+<Xdmf xmlns:xi="http://www.w3.org/2001/XInclude" Version="3.0">
+ <Domain>
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diff --git a/Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_right_boundary_ts_0_t_0.000000.h5 b/Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_right_boundary_ts_0_t_0.000000.h5
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diff --git a/Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_ts_1_t_1.000000.xdmf b/Tests/Data/Parabolic/LiquidFlow/SimpleSynthetics/XDMF/square_5x5_tris_32_ts_1_t_1.000000.xdmf
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--
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