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Commit 5829b67f authored by Dmitri Naumov's avatar Dmitri Naumov
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Merge branch 'parallel_TRM0' into 'master' 

Enable parallel computing in TRM with Taylor-Hood elements

See merge request ogs/ogs!3920
parents 64fe89d8 8855fd8c
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ProcessLib/ThermoRichardsMechanics/CreateThermoRichardsMechanicsProcess.cpp
+ 8
− 1
View file @ 5829b67f
......@@ -178,13 +178,20 @@ std::unique_ptr<Process> createThermoRichardsMechanicsProcess(
mass_lumping = *mass_lumping_ptr;
}
const bool use_TaylorHood_elements =
variable_p->getShapeFunctionOrder() !=
variable_u->getShapeFunctionOrder()
? true
: false;
ThermoRichardsMechanicsProcessData<DisplacementDim> process_data{
materialIDs(mesh),
std::move(media_map),
std::move(solid_constitutive_relations),
initial_stress,
specific_body_force,
mass_lumping};
mass_lumping,
use_TaylorHood_elements};
SecondaryVariableCollection secondary_variables;
......
ProcessLib/ThermoRichardsMechanics/Tests.cmake
+ 104
− 0
View file @ 5829b67f
......@@ -73,3 +73,107 @@ AddTest(
expected_pointheatsource_quadratic-mesh_ts_10_t_50000.000000.vtu PointHeatSource_ts_10_t_50000.000000.vtu epsilon epsilon 5e-6 1e-5
expected_pointheatsource_quadratic-mesh_ts_10_t_50000.000000.vtu PointHeatSource_ts_10_t_50000.000000.vtu sigma sigma 200.0 200.0
)
#PETSc
AddTest(
NAME ParallelFEM_ThermoRichardsMechanics_3D_ThermoElastic_Stress_Analysis
PATH ThermoRichardsMechanics/Simple3DThermoMechanicsFromTM
RUNTIME 45
EXECUTABLE ogs
EXECUTABLE_ARGS cube_1e3.prj
WRAPPER mpirun
WRAPPER_ARGS -np 3
TESTER vtkdiff
REQUIREMENTS OGS_USE_MPI
DIFF_DATA
cube_1e3_tm_ts_17_t_72000_000000_0.vtu cube_1e3_tm_ts_17_t_72000_000000_0.vtu velocity velocity 1e-10 1e-9
cube_1e3_tm_ts_17_t_72000_000000_1.vtu cube_1e3_tm_ts_17_t_72000_000000_1.vtu velocity velocity 1e-10 1e-9
cube_1e3_tm_ts_17_t_72000_000000_0.vtu cube_1e3_tm_ts_17_t_72000_000000_0.vtu displacement displacement 1e-10 1e-9
cube_1e3_tm_ts_17_t_72000_000000_1.vtu cube_1e3_tm_ts_17_t_72000_000000_1.vtu displacement displacement 1e-10 1e-9
cube_1e3_tm_ts_17_t_72000_000000_0.vtu cube_1e3_tm_ts_17_t_72000_000000_0.vtu sigma sigma 1e-7 1e-9
cube_1e3_tm_ts_17_t_72000_000000_1.vtu cube_1e3_tm_ts_17_t_72000_000000_1.vtu sigma sigma 1e-7 1e-9
cube_1e3_tm_ts_17_t_72000_000000_0.vtu cube_1e3_tm_ts_17_t_72000_000000_0.vtu epsilon epsilon 1e-10 1e-9
cube_1e3_tm_ts_17_t_72000_000000_1.vtu cube_1e3_tm_ts_17_t_72000_000000_1.vtu epsilon epsilon 1e-10 1e-9
)
AddTest(
NAME ParallelFEM_ThermoRichardsMechanics_FullySaturatedFlowMechanics
PATH ThermoRichardsMechanics/FullySaturatedFlowMechanics/PETSc
RUNTIME 10
EXECUTABLE ogs
EXECUTABLE_ARGS flow_fully_saturated_petsc.prj
WRAPPER mpirun
WRAPPER_ARGS -np 2
TESTER vtkdiff
REQUIREMENTS OGS_USE_MPI
DIFF_DATA
flow_fully_saturated_ts_2_t_2_000000_0.vtu flow_fully_saturated_ts_2_t_2_000000_0.vtu pressure pressure 1e-10 1e-9
flow_fully_saturated_ts_2_t_2_000000_0.vtu flow_fully_saturated_ts_2_t_2_000000_0.vtu velocity velocity 1e-10 1e-9
flow_fully_saturated_ts_2_t_2_000000_1.vtu flow_fully_saturated_ts_2_t_2_000000_1.vtu velocity velocity 1e-10 1e-9
flow_fully_saturated_ts_2_t_2_000000_0.vtu flow_fully_saturated_ts_2_t_2_000000_0.vtu displacement displacement 1e-10 1e-9
flow_fully_saturated_ts_2_t_2_000000_1.vtu flow_fully_saturated_ts_2_t_2_000000_1.vtu displacement displacement 1e-10 1e-9
flow_fully_saturated_ts_2_t_2_000000_0.vtu flow_fully_saturated_ts_2_t_2_000000_0.vtu sigma sigma 1e-10 1e-9
flow_fully_saturated_ts_2_t_2_000000_1.vtu flow_fully_saturated_ts_2_t_2_000000_1.vtu sigma sigma 1e-10 1e-9
flow_fully_saturated_ts_2_t_2_000000_0.vtu flow_fully_saturated_ts_2_t_2_000000_0.vtu epsilon epsilon 1e-10 1e-9
flow_fully_saturated_ts_2_t_2_000000_1.vtu flow_fully_saturated_ts_2_t_2_000000_1.vtu epsilon epsilon 1e-10 1e-9
)
AddTest(
NAME ParallelFEM_ThermoRichardsMechanics_point_heat_injection
PATH ThermoRichardsMechanics/PointHeatSource
RUNTIME 45
EXECUTABLE ogs
EXECUTABLE_ARGS point_heat_source_2D.prj
WRAPPER mpirun
WRAPPER_ARGS -np 3
TESTER vtkdiff
REQUIREMENTS OGS_USE_MPI
DIFF_DATA
PointHeatSource_ts_10_t_50000_000000_0.vtu PointHeatSource_ts_10_t_50000_000000_0.vtu displacement displacement 1e-10 1.0e-9
PointHeatSource_ts_10_t_50000_000000_0.vtu PointHeatSource_ts_10_t_50000_000000_0.vtu pressure pressure 1e-10 1.0e-6
PointHeatSource_ts_10_t_50000_000000_0.vtu PointHeatSource_ts_10_t_50000_000000_0.vtu temperature temperature 1e-10 1.0e-9
PointHeatSource_ts_10_t_50000_000000_0.vtu PointHeatSource_ts_10_t_50000_000000_0.vtu epsilon epsilon 1e-10 1.0e-9
PointHeatSource_ts_10_t_50000_000000_0.vtu PointHeatSource_ts_10_t_50000_000000_0.vtu sigma sigma 1e-10 1.0e-6
#
PointHeatSource_ts_10_t_50000_000000_1.vtu PointHeatSource_ts_10_t_50000_000000_1.vtu displacement displacement 1e-10 1.0e-9
PointHeatSource_ts_10_t_50000_000000_1.vtu PointHeatSource_ts_10_t_50000_000000_1.vtu pressure pressure 1e-10 1.0e-6
PointHeatSource_ts_10_t_50000_000000_1.vtu PointHeatSource_ts_10_t_50000_000000_1.vtu temperature temperature 1e-10 1.0e-9
PointHeatSource_ts_10_t_50000_000000_1.vtu PointHeatSource_ts_10_t_50000_000000_1.vtu epsilon epsilon 1e-10 1.0e-9
PointHeatSource_ts_10_t_50000_000000_1.vtu PointHeatSource_ts_10_t_50000_000000_1.vtu sigma sigma 1e-10 1.0e-6
#
PointHeatSource_ts_10_t_50000_000000_2.vtu PointHeatSource_ts_10_t_50000_000000_2.vtu displacement displacement 1e-10 1.0e-9
PointHeatSource_ts_10_t_50000_000000_2.vtu PointHeatSource_ts_10_t_50000_000000_2.vtu pressure pressure 1e-10 1.0e-6
PointHeatSource_ts_10_t_50000_000000_2.vtu PointHeatSource_ts_10_t_50000_000000_2.vtu temperature temperature 1e-10 1.0e-9
PointHeatSource_ts_10_t_50000_000000_2.vtu PointHeatSource_ts_10_t_50000_000000_2.vtu epsilon epsilon 1e-10 1.0e-9
PointHeatSource_ts_10_t_50000_000000_2.vtu PointHeatSource_ts_10_t_50000_000000_2.vtu sigma sigma 1e-10 1.0e-6
)
AddTest(
NAME ParallelFEM_ThermoRichardsMechanics_point_heat_injection_gml
PATH ThermoRichardsMechanics/PointHeatSource
RUNTIME 45
EXECUTABLE ogs
EXECUTABLE_ARGS point_heat_source_2D_gml.prj
WRAPPER mpirun
WRAPPER_ARGS -np 3
TESTER vtkdiff
REQUIREMENTS OGS_USE_MPI
DIFF_DATA
PointHeatSource_gml_ts_10_t_50000_000000_0.vtu PointHeatSource_gml_ts_10_t_50000_000000_0.vtu displacement displacement 1e-10 1.0e-9
PointHeatSource_gml_ts_10_t_50000_000000_0.vtu PointHeatSource_gml_ts_10_t_50000_000000_0.vtu pressure pressure 1e-10 1.0e-6
PointHeatSource_gml_ts_10_t_50000_000000_0.vtu PointHeatSource_gml_ts_10_t_50000_000000_0.vtu temperature temperature 1e-10 1.0e-9
PointHeatSource_gml_ts_10_t_50000_000000_0.vtu PointHeatSource_gml_ts_10_t_50000_000000_0.vtu epsilon epsilon 1e-10 1.0e-9
PointHeatSource_gml_ts_10_t_50000_000000_0.vtu PointHeatSource_gml_ts_10_t_50000_000000_0.vtu sigma sigma 1e-10 1.0e-6
#
PointHeatSource_gml_ts_10_t_50000_000000_1.vtu PointHeatSource_gml_ts_10_t_50000_000000_1.vtu displacement displacement 1e-10 1.0e-9
PointHeatSource_gml_ts_10_t_50000_000000_1.vtu PointHeatSource_gml_ts_10_t_50000_000000_1.vtu pressure pressure 1e-10 1.0e-6
PointHeatSource_gml_ts_10_t_50000_000000_1.vtu PointHeatSource_gml_ts_10_t_50000_000000_1.vtu temperature temperature 1e-10 1.0e-9
PointHeatSource_gml_ts_10_t_50000_000000_1.vtu PointHeatSource_gml_ts_10_t_50000_000000_1.vtu epsilon epsilon 1e-10 1.0e-9
PointHeatSource_gml_ts_10_t_50000_000000_1.vtu PointHeatSource_gml_ts_10_t_50000_000000_1.vtu sigma sigma 1e-10 1.0e-6
#
PointHeatSource_gml_ts_10_t_50000_000000_2.vtu PointHeatSource_gml_ts_10_t_50000_000000_2.vtu displacement displacement 1e-10 1.0e-9
PointHeatSource_gml_ts_10_t_50000_000000_2.vtu PointHeatSource_gml_ts_10_t_50000_000000_2.vtu pressure pressure 1e-10 1.0e-6
PointHeatSource_gml_ts_10_t_50000_000000_2.vtu PointHeatSource_gml_ts_10_t_50000_000000_2.vtu temperature temperature 1e-10 1.0e-9
PointHeatSource_gml_ts_10_t_50000_000000_2.vtu PointHeatSource_gml_ts_10_t_50000_000000_2.vtu epsilon epsilon 1e-10 1.0e-9
PointHeatSource_gml_ts_10_t_50000_000000_2.vtu PointHeatSource_gml_ts_10_t_50000_000000_2.vtu sigma sigma 1e-10 1.0e-6
)
ProcessLib/ThermoRichardsMechanics/ThermoRichardsMechanicsProcess.cpp
+ 4
− 4
View file @ 5829b67f
......@@ -109,12 +109,12 @@ template <int DisplacementDim>
void ThermoRichardsMechanicsProcess<DisplacementDim>::constructDofTable()
{
// Create single component dof in every of the mesh's nodes.
_mesh_subset_all_nodes =
std::make_unique<MeshLib::MeshSubset>(_mesh, _mesh.getNodes());
_mesh_subset_all_nodes = std::make_unique<MeshLib::MeshSubset>(
_mesh, _mesh.getNodes(), process_data_.use_TaylorHood_elements);
// Create single component dof in the mesh's base nodes.
base_nodes_ = MeshLib::getBaseNodes(_mesh.getElements());
mesh_subset_base_nodes_ =
std::make_unique<MeshLib::MeshSubset>(_mesh, base_nodes_);
mesh_subset_base_nodes_ = std::make_unique<MeshLib::MeshSubset>(
_mesh, base_nodes_, process_data_.use_TaylorHood_elements);
// TODO move the two data members somewhere else.
// for extrapolation of secondary variables of stress or strain
......
ProcessLib/ThermoRichardsMechanics/ThermoRichardsMechanicsProcessData.h
+ 2
− 0
View file @ 5829b67f
......@@ -53,6 +53,8 @@ struct ThermoRichardsMechanicsProcessData
bool const apply_mass_lumping;
const bool use_TaylorHood_elements;
MeshLib::PropertyVector<double>* element_saturation = nullptr;
MeshLib::PropertyVector<double>* element_porosity = nullptr;
MeshLib::PropertyVector<double>* element_stresses = nullptr;
......
Tests/Data/ThermoRichardsMechanics/FullySaturatedFlowMechanics/PETSc/flow_fully_saturated_petsc.prj 0 → 100644
+ 303
− 0
View file @ 5829b67f
<?xml version='1.0' encoding='ISO-8859-1'?>
<OpenGeoSysProject>
<mesh>square_1x1_quad8_1e2.vtu</mesh>
<geometry>square_1x1.gml</geometry>
<processes>
<process>
<name>RM</name>
<type>THERMO_RICHARDS_MECHANICS</type>
<integration_order>3</integration_order>
<constitutive_relation>
<type>LinearElasticIsotropic</type>
<youngs_modulus>E</youngs_modulus>
<poissons_ratio>nu</poissons_ratio>
</constitutive_relation>
<process_variables>
<temperature>temperature</temperature>
<pressure>pressure</pressure>
<displacement>displacement</displacement>
</process_variables>
<secondary_variables>
<secondary_variable internal_name="sigma" output_name="sigma"/>
<secondary_variable internal_name="epsilon" output_name="epsilon"/>
<secondary_variable internal_name="velocity" output_name="velocity"/>
<secondary_variable internal_name="saturation" output_name="saturation"/>
</secondary_variables>
<specific_body_force>0 0</specific_body_force>
</process>
</processes>
<media>
<medium>
<phases>
<phase>
<type>AqueousLiquid</type>
<properties>
<property>
<name>viscosity</name>
<type>Constant</type>
<value>1e-9</value>
</property>
<property>
<name>density</name>
<type>Constant</type>
<value>1</value>
</property>
<property>
<name>specific_heat_capacity</name>
<type>Constant</type>
<value>0.0</value>
</property>
<property>
<name>thermal_conductivity</name>
<type>Constant</type>
<value>1.0</value>
</property>
</properties>
</phase>
<phase>
<type>Solid</type>
<properties>
<property>
<name>density</name>
<type>Constant</type>
<value>1</value>
</property>
<property>
<name>bulk_modulus</name>
<type>Constant</type>
<value>1e100</value>
</property>
<property>
<name>specific_heat_capacity</name>
<type>Constant</type>
<value>0.0</value>
</property>
<property>
<name>thermal_conductivity</name>
<type>Constant</type>
<value>1.0</value>
</property>
<property>
<name>thermal_expansivity</name>
<type>Constant</type>
<value>0.0</value>
</property>
</properties>
</phase>
</phases>
<properties>
<property>
<name>relative_permeability</name>
<type>Constant</type>
<value>1</value>
</property>
<property>
<name>permeability</name>
<type>Constant</type>
<value>1e-12</value>
</property>
<property>
<name>biot_coefficient</name>
<type>Constant</type>
<value>1</value>
</property>
<property>
<name>saturation</name>
<type>Constant</type>
<value>1</value>
</property>
<property>
<name>bishops_effective_stress</name>
<type>BishopsPowerLaw</type>
<exponent>1</exponent>
</property>
<property>
<name>porosity</name>
<type>Constant</type>
<value>0.8</value>
</property>
<property>
<name>thermal_conductivity</name>
<type>EffectiveThermalConductivityPorosityMixing</type>
</property>
</properties>
</medium>
</media>
<time_loop>
<processes>
<process ref="RM">
<nonlinear_solver>basic_newton</nonlinear_solver>
<convergence_criterion>
<type>PerComponentDeltaX</type>
<norm_type>NORM2</norm_type>
<abstols>1e-11 1e-14 1e-16 1e-16</abstols>
</convergence_criterion>
<time_discretization>
<type>BackwardEuler</type>
</time_discretization>
<time_stepping>
<type>FixedTimeStepping</type>
<t_initial>0</t_initial>
<t_end>2</t_end>
<timesteps>
<pair>
<repeat>2</repeat>
<delta_t>1</delta_t>
</pair>
</timesteps>
</time_stepping>
</process>
</processes>
<output>
<type>VTK</type>
<prefix>flow_fully_saturated</prefix>
<timesteps>
<pair>
<repeat>10000</repeat>
<each_steps>1</each_steps>
</pair>
</timesteps>
<variables>
<variable>displacement</variable>
<variable>pressure</variable>
<variable>sigma</variable>
<variable>epsilon</variable>
<variable>velocity</variable>
<variable>saturation</variable>
</variables>
<suffix>_ts_{:timestep}_t_{:time}</suffix>
</output>
</time_loop>
<parameters>
<!-- Mechanics -->
<parameter>
<name>E</name>
<type>Constant</type>
<value>1e10</value>
</parameter>
<parameter>
<name>nu</name>
<type>Constant</type>
<value>.3</value>
</parameter>
<!-- Model parameters -->
<parameter>
<name>mu</name>
<type>Constant</type>
<value>1e-9</value>
</parameter>
<parameter>
<name>displacement0</name>
<type>Constant</type>
<values>0 0</values>
</parameter>
<parameter>
<name>pressure_ic</name>
<type>Constant</type>
<values>0</values>
</parameter>
<parameter>
<name>dirichlet0</name>
<type>Constant</type>
<value>0</value>
</parameter>
<parameter>
<name>dirichlet1</name>
<type>Constant</type>
<value>1</value>
</parameter>
<parameter>
<name>T_ref</name>
<type>Constant</type>
<value>293.15</value>
</parameter>
</parameters>
<process_variables>
<process_variable>
<name>temperature</name>
<components>1</components>
<order>1</order>
<initial_condition>T_ref</initial_condition>
<boundary_conditions>
<boundary_condition>
<geometrical_set>square_1x1_geometry</geometrical_set>
<geometry>left</geometry>
<type>Dirichlet</type>
<parameter>T_ref</parameter>
</boundary_condition>
</boundary_conditions>
</process_variable>
<process_variable>
<name>displacement</name>
<components>2</components>
<order>2</order>
<initial_condition>displacement0</initial_condition>
<boundary_conditions>
<boundary_condition>
<geometrical_set>square_1x1_geometry</geometrical_set>
<geometry>left</geometry>
<type>Dirichlet</type>
<component>0</component>
<parameter>dirichlet0</parameter>
</boundary_condition>
<boundary_condition>
<geometrical_set>square_1x1_geometry</geometrical_set>
<geometry>right</geometry>
<type>Dirichlet</type>
<component>0</component>
<parameter>dirichlet0</parameter>
</boundary_condition>
<boundary_condition>
<geometrical_set>square_1x1_geometry</geometrical_set>
<geometry>bottom</geometry>
<type>Dirichlet</type>
<component>1</component>
<parameter>dirichlet0</parameter>
</boundary_condition>
<boundary_condition>
<geometrical_set>square_1x1_geometry</geometrical_set>
<geometry>top</geometry>
<type>Dirichlet</type>
<component>1</component>
<parameter>dirichlet0</parameter>
</boundary_condition>
</boundary_conditions>
</process_variable>
<process_variable>
<name>pressure</name>
<components>1</components>
<order>1</order>
<initial_condition>pressure_ic</initial_condition>
<boundary_conditions>
<boundary_condition>
<geometrical_set>square_1x1_geometry</geometrical_set>
<geometry>left</geometry>
<type>Dirichlet</type>
<parameter>dirichlet0</parameter>
</boundary_condition>
<boundary_condition>
<geometrical_set>square_1x1_geometry</geometrical_set>
<geometry>right</geometry>
<type>Dirichlet</type>
<parameter>dirichlet1</parameter>
</boundary_condition>
</boundary_conditions>
</process_variable>
</process_variables>
<nonlinear_solvers>
<nonlinear_solver>
<name>basic_newton</name>
<type>Newton</type>
<max_iter>50</max_iter>
<linear_solver>general_linear_solver</linear_solver>
</nonlinear_solver>
</nonlinear_solvers>
<linear_solvers>
<linear_solver>
<name>general_linear_solver</name>
<petsc>
<parameters>-ksp_type gmres -pc_type hypre -pc_hypre_type boomeramg -ksp_rtol 1e-8 -ksp_rtol 1e-10 -ksp_max_it 4000</parameters>
</petsc>
</linear_solver>
</linear_solvers>
</OpenGeoSysProject>
Tests/Data/ThermoRichardsMechanics/FullySaturatedFlowMechanics/PETSc/square_1x1.gml 0 → 100644
+ 31
− 0
View file @ 5829b67f
<?xml version="1.0" encoding="ISO-8859-1"?>
<?xml-stylesheet type="text/xsl" href="OpenGeoSysGLI.xsl"?>
<OpenGeoSysGLI xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:ogs="http://www.opengeosys.org">
<name>square_1x1_geometry</name>
<points>
<point id="0" x="0" y="0" z="0" name="origin"/>
<point id="1" x="0" y="1" z="0"/>
<point id="2" x="1" y="0" z="0"/>
<point id="3" x="1" y="1" z="0"/>
</points>
<polylines>
<polyline id="0" name="left">
<pnt>0</pnt>
<pnt>1</pnt>
</polyline>
<polyline id="1" name="right">
<pnt>2</pnt>
<pnt>3</pnt>
</polyline>
<polyline id="2" name="bottom">
<pnt>0</pnt>
<pnt>2</pnt>
</polyline>
<polyline id="3" name="top">
<pnt>1</pnt>
<pnt>3</pnt>
</polyline>
</polylines>
</OpenGeoSysGLI>
Tests/Data/ThermoRichardsMechanics/FullySaturatedFlowMechanics/PETSc/square_1x1_quad8_1e2.vtu 0 → 100644
+ 33
− 0
View file @ 5829b67f
<?xml version="1.0"?>
<VTKFile type="UnstructuredGrid" version="0.1" byte_order="LittleEndian" header_type="UInt32" compressor="vtkZLibDataCompressor">
<UnstructuredGrid>
<Piece NumberOfPoints="341" NumberOfCells="100">
<PointData>
</PointData>
<CellData>
</CellData>
<Points>
<DataArray type="Float64" Name="Points" NumberOfComponents="3" format="binary" RangeMin="0" RangeMax="1.4142135624">
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