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Commit fc0e0988 authored by renchao.lu's avatar renchao.lu Committed by Dmitri Naumov
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[T] test case.

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ProcessLib/ComponentTransport/Tests.cmake
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...@@ -816,6 +816,7 @@ if (NOT OGS_USE_MPI) ...@@ -816,6 +816,7 @@ if (NOT OGS_USE_MPI)
OgsTest(PROJECTFILE Parabolic/ComponentTransport/ReactiveTransport/KineticReactant/1d_isofrac_flag_formula.prj RUNTIME 20) OgsTest(PROJECTFILE Parabolic/ComponentTransport/ReactiveTransport/KineticReactant/1d_isofrac_flag_formula.prj RUNTIME 20)
OgsTest(PROJECTFILE Parabolic/ComponentTransport/ReactiveTransport/KineticReactant_AllAsComponents/KineticReactant2.prj RUNTIME 60) OgsTest(PROJECTFILE Parabolic/ComponentTransport/ReactiveTransport/KineticReactant_AllAsComponents/KineticReactant2.prj RUNTIME 60)
OgsTest(PROJECTFILE Parabolic/ComponentTransport/ReactiveTransport/SurfaceComplexation/RadionuclideSorption.prj RUNTIME 60) OgsTest(PROJECTFILE Parabolic/ComponentTransport/ReactiveTransport/SurfaceComplexation/RadionuclideSorption.prj RUNTIME 60)
OgsTest(PROJECTFILE Parabolic/ComponentTransport/ReactiveTransport/SurfaceComplexation/LookupTable/RadionuclideSorption.prj RUNTIME 10)
OgsTest(PROJECTFILE Parabolic/ComponentTransport/ReactiveTransport/EquilibriumPhase/calciteDissolvePrecipitateOnly.prj RUNTIME 25) OgsTest(PROJECTFILE Parabolic/ComponentTransport/ReactiveTransport/EquilibriumPhase/calciteDissolvePrecipitateOnly.prj RUNTIME 25)
OgsTest(PROJECTFILE Parabolic/ComponentTransport/ReactiveTransport/EquilibriumPhase/calcitePorosityChange.prj RUNTIME 25) OgsTest(PROJECTFILE Parabolic/ComponentTransport/ReactiveTransport/EquilibriumPhase/calcitePorosityChange.prj RUNTIME 25)
OgsTest(PROJECTFILE Parabolic/ComponentTransport/ReactiveTransport/CationExchange/exchange.prj RUNTIME 60) OgsTest(PROJECTFILE Parabolic/ComponentTransport/ReactiveTransport/CationExchange/exchange.prj RUNTIME 60)
......
Tests/Data/Parabolic/ComponentTransport/ReactiveTransport/SurfaceComplexation/LookupTable/RadionuclideSorption.prj 0 → 100644
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View file @ fc0e0988
<?xml version="1.0" encoding="ISO-8859-1"?>
<OpenGeoSysProject>
<meshes>
<mesh>RadionuclideSorption.vtu</mesh>
<mesh>RadionuclideSorption_left.vtu</mesh>
<mesh>RadionuclideSorption_right.vtu</mesh>
</meshes>
<processes>
<process>
<name>hc</name>
<type>ComponentTransport</type>
<integration_order>2</integration_order>
<coupling_scheme>staggered</coupling_scheme>
<process_variables>
<concentration>Na</concentration>
<concentration>Cl</concentration>
<concentration>Ca</concentration>
<concentration>C(4)</concentration>
<concentration>H</concentration>
<!--Radionuclide-->
<concentration>U(6)</concentration>
<pressure>pressure</pressure>
</process_variables>
<tabular_file>table.txt</tabular_file>
<specific_body_force>0</specific_body_force>
</process>
</processes>
<media>
<medium id="0">
<phases>
<phase>
<type>AqueousLiquid</type>
<components>
<component>
<name>Na</name>
<properties>
<property>
<name>pore_diffusion</name>
<type>Constant</type>
<value>1e-9</value>
</property>
<property>
<name>retardation_factor</name>
<type>Constant</type>
<value>1</value>
</property>
<property>
<name>decay_rate</name>
<type>Parameter</type>
<parameter_name>decay</parameter_name>
</property>
</properties>
</component>
<component>
<name>Cl</name>
<properties>
<property>
<name>pore_diffusion</name>
<type>Constant</type>
<value>1e-9</value>
</property>
<property>
<name>retardation_factor</name>
<type>Constant</type>
<value>1</value>
</property>
<property>
<name>decay_rate</name>
<type>Parameter</type>
<parameter_name>decay</parameter_name>
</property>
</properties>
</component>
<component>
<name>Ca</name>
<properties>
<property>
<name>pore_diffusion</name>
<type>Constant</type>
<value>1e-9</value>
</property>
<property>
<name>retardation_factor</name>
<type>Constant</type>
<value>1</value>
</property>
<property>
<name>decay_rate</name>
<type>Parameter</type>
<parameter_name>decay</parameter_name>
</property>
</properties>
</component>
<component>
<name>C(4)</name>
<properties>
<property>
<name>pore_diffusion</name>
<type>Constant</type>
<value>1e-9</value>
</property>
<property>
<name>retardation_factor</name>
<type>Constant</type>
<value>1</value>
</property>
<property>
<name>decay_rate</name>
<type>Parameter</type>
<parameter_name>decay</parameter_name>
</property>
</properties>
</component>
<component>
<name>H</name>
<properties>
<property>
<name>pore_diffusion</name>
<type>Constant</type>
<value>1e-9</value>
</property>
<property>
<name>retardation_factor</name>
<type>Constant</type>
<value>1</value>
</property>
<property>
<name>decay_rate</name>
<type>Parameter</type>
<parameter_name>decay</parameter_name>
</property>
</properties>
</component>
<component>
<name>U(6)</name>
<properties>
<property>
<name>pore_diffusion</name>
<type>Constant</type>
<value>1e-9</value>
</property>
<property>
<name>retardation_factor</name>
<type>Constant</type>
<value>1</value>
</property>
<property>
<name>decay_rate</name>
<type>Parameter</type>
<parameter_name>decay</parameter_name>
</property>
</properties>
</component>
</components>
<properties>
<property>
<name>density</name>
<type>Constant</type>
<value>1e3</value>
</property>
<property>
<name>viscosity</name>
<type>Constant</type>
<value>1e-3</value>
</property>
</properties>
</phase>
</phases>
<properties>
<property>
<name>permeability</name>
<type>Parameter</type>
<parameter_name>kappa</parameter_name>
</property>
<property>
<name>porosity</name>
<type>Parameter</type>
<parameter_name>porosity</parameter_name>
</property>
<property>
<name>longitudinal_dispersivity</name>
<type>Constant</type>
<value>0.2</value>
</property>
<property>
<name>transversal_dispersivity</name>
<type>Constant</type>
<value>0.2</value>
</property>
</properties>
</medium>
</media>
<time_loop>
<global_process_coupling>
<max_iter>6</max_iter>
<convergence_criteria>
<!-- convergence criterion for the first process (p) -->
<convergence_criterion>
<type>DeltaX</type>
<norm_type>NORM2</norm_type>
<reltol>1e-14</reltol>
</convergence_criterion>
<!-- convergence criterion for the second process (Na) -->
<convergence_criterion>
<type>DeltaX</type>
<norm_type>NORM2</norm_type>
<reltol>1e-14</reltol>
</convergence_criterion>
<!-- convergence criterion for the second process (Cl) -->
<convergence_criterion>
<type>DeltaX</type>
<norm_type>NORM2</norm_type>
<reltol>1e-14</reltol>
</convergence_criterion>
<!-- convergence criterion for the second process (Ca) -->
<convergence_criterion>
<type>DeltaX</type>
<norm_type>NORM2</norm_type>
<reltol>1e-14</reltol>
</convergence_criterion>
<!-- convergence criterion for the second process (C(4)) -->
<convergence_criterion>
<type>DeltaX</type>
<norm_type>NORM2</norm_type>
<reltol>1e-14</reltol>
</convergence_criterion>
<!-- convergence criterion for the second process (H) -->
<convergence_criterion>
<type>DeltaX</type>
<norm_type>NORM2</norm_type>
<reltol>1e-14</reltol>
</convergence_criterion>
<!-- convergence criterion for the second process (U(6)) -->
<convergence_criterion>
<type>DeltaX</type>
<norm_type>NORM2</norm_type>
<reltol>1e-14</reltol>
</convergence_criterion>
</convergence_criteria>
</global_process_coupling>
<processes>
<!-- convergence criterion for hydraulic equation -->
<process ref="hc">
<nonlinear_solver>basic_picard</nonlinear_solver>
<convergence_criterion>
<type>DeltaX</type>
<norm_type>NORM2</norm_type>
<reltol>1e-14</reltol>
</convergence_criterion>
<time_discretization>
<type>BackwardEuler</type>
</time_discretization>
<time_stepping>
<type>FixedTimeStepping</type>
<t_initial>0.0</t_initial>
<t_end>115000</t_end>
<timesteps>
<pair>
<repeat>115</repeat>
<delta_t>1000</delta_t>
</pair>
</timesteps>
</time_stepping>
</process>
<!-- convergence criterion for component transport equation (Na) -->
<process ref="hc">
<nonlinear_solver>basic_picard</nonlinear_solver>
<convergence_criterion>
<type>DeltaX</type>
<norm_type>NORM2</norm_type>
<reltol>1e-14</reltol>
</convergence_criterion>
<time_discretization>
<type>BackwardEuler</type>
</time_discretization>
<time_stepping>
<type>FixedTimeStepping</type>
<t_initial>0.0</t_initial>
<t_end>115000</t_end>
<timesteps>
<pair>
<repeat>115</repeat>
<delta_t>1000</delta_t>
</pair>
</timesteps>
</time_stepping>
</process>
<!-- convergence criterion for component transport equation (Cl) -->
<process ref="hc">
<nonlinear_solver>basic_picard</nonlinear_solver>
<convergence_criterion>
<type>DeltaX</type>
<norm_type>NORM2</norm_type>
<reltol>1e-14</reltol>
</convergence_criterion>
<time_discretization>
<type>BackwardEuler</type>
</time_discretization>
<time_stepping>
<type>FixedTimeStepping</type>
<t_initial>0.0</t_initial>
<t_end>115000</t_end>
<timesteps>
<pair>
<repeat>115</repeat>
<delta_t>1000</delta_t>
</pair>
</timesteps>
</time_stepping>
</process>
<!-- convergence criterion for component transport equation (Ca) -->
<process ref="hc">
<nonlinear_solver>basic_picard</nonlinear_solver>
<convergence_criterion>
<type>DeltaX</type>
<norm_type>NORM2</norm_type>
<reltol>1e-14</reltol>
</convergence_criterion>
<time_discretization>
<type>BackwardEuler</type>
</time_discretization>
<time_stepping>
<type>FixedTimeStepping</type>
<t_initial>0.0</t_initial>
<t_end>115000</t_end>
<timesteps>
<pair>
<repeat>115</repeat>
<delta_t>1000</delta_t>
</pair>
</timesteps>
</time_stepping>
</process>
<!-- convergence criterion for component transport equation (C(4)) -->
<process ref="hc">
<nonlinear_solver>basic_picard</nonlinear_solver>
<convergence_criterion>
<type>DeltaX</type>
<norm_type>NORM2</norm_type>
<reltol>1e-14</reltol>
</convergence_criterion>
<time_discretization>
<type>BackwardEuler</type>
</time_discretization>
<time_stepping>
<type>FixedTimeStepping</type>
<t_initial>0.0</t_initial>
<t_end>115000</t_end>
<timesteps>
<pair>
<repeat>115</repeat>
<delta_t>1000</delta_t>
</pair>
</timesteps>
</time_stepping>
</process>
<!-- convergence criterion for component transport equation (H) -->
<process ref="hc">
<nonlinear_solver>basic_picard</nonlinear_solver>
<convergence_criterion>
<type>DeltaX</type>
<norm_type>NORM2</norm_type>
<reltol>1e-14</reltol>
</convergence_criterion>
<time_discretization>
<type>BackwardEuler</type>
</time_discretization>
<time_stepping>
<type>FixedTimeStepping</type>
<t_initial>0.0</t_initial>
<t_end>115000</t_end>
<timesteps>
<pair>
<repeat>115</repeat>
<delta_t>1000</delta_t>
</pair>
</timesteps>
</time_stepping>
</process>
<!-- convergence criterion for component transport equation (U(6)) -->
<process ref="hc">
<nonlinear_solver>basic_picard</nonlinear_solver>
<convergence_criterion>
<type>DeltaX</type>
<norm_type>NORM2</norm_type>
<reltol>1e-14</reltol>
</convergence_criterion>
<time_discretization>
<type>BackwardEuler</type>
</time_discretization>
<time_stepping>
<type>FixedTimeStepping</type>
<t_initial>0.0</t_initial>
<t_end>115000</t_end>
<timesteps>
<pair>
<repeat>115</repeat>
<delta_t>1000</delta_t>
</pair>
</timesteps>
</time_stepping>
</process>
</processes>
<output>
<type>VTK</type>
<prefix>RadionuclideSorption</prefix>
<suffix>_ts_{:timestep}_t_{:time}</suffix>
<timesteps>
<pair>
<repeat>5</repeat>
<each_steps>23</each_steps>
</pair>
</timesteps>
<variables>
<variable>Na</variable>
<variable>Cl</variable>
<variable>Ca</variable>
<variable>C(4)</variable>
<variable>H</variable>
<variable>U(6)</variable>
<variable>pressure</variable>
</variables>
</output>
</time_loop>
<parameters>
<parameter>
<name>kappa</name>
<type>Constant</type>
<values>1.019368e-11</values>
</parameter>
<parameter>
<name>porosity</name>
<type>Constant</type>
<value>0.2</value>
</parameter>
<parameter>
<name>retardation</name>
<type>Constant</type>
<value>1</value>
</parameter>
<parameter>
<name>decay</name>
<type>Constant</type>
<value>0</value>
</parameter>
<parameter>
<name>p0</name>
<type>Constant</type>
<value>0</value>
</parameter>
<parameter>
<name>p_Neumann_left</name>
<type>Constant</type>
<value>3e-2</value>
</parameter>
<parameter>
<name>p_Dirichlet_right</name>
<type>Constant</type>
<value>0</value>
</parameter>
<parameter>
<name>c0_Na</name>
<type>Constant</type>
<value>1e-3</value>
</parameter>
<parameter>
<name>c0_Cl</name>
<type>Constant</type>
<value>6e-2</value>
</parameter>
<parameter>
<name>c0_Ca</name>
<type>Constant</type>
<value>2.502e-2</value>
</parameter>
<parameter>
<name>c0_C(4)</name>
<type>Constant</type>
<value>1e-3</value>
</parameter>
<parameter>
<name>c0_H</name>
<type>Constant</type>
<!--pH=7-->
<value>1e-7</value>
</parameter>
<parameter>
<name>c0</name>
<type>Constant</type>
<value>0</value>
</parameter>
<parameter>
<name>c_left_Na</name>
<type>Constant</type>
<value>1e-3</value>
</parameter>
<parameter>
<name>c_left_Cl</name>
<type>Constant</type>
<value>6e-2</value>
</parameter>
<parameter>
<name>c_left_Ca</name>
<type>Constant</type>
<value>2.502e-2</value>
</parameter>
<parameter>
<name>c_left_C(4)</name>
<type>Constant</type>
<value>1e-3</value>
</parameter>
<parameter>
<name>c_left_H</name>
<type>Constant</type>
<!--pH=7-->
<value>1e-7</value>
</parameter>
<parameter>
<name>c_spatial</name>
<type>Constant</type>
<value>1</value>
</parameter>
<parameter>
<name>c_left_default</name>
<type>CurveScaled</type>
<curve>c_temporal_default</curve>
<parameter>c_spatial</parameter>
</parameter>
</parameters>
<curves>
<curve>
<name>c_temporal_default</name>
<coords>0 10000 10000.001 115000</coords>
<values>1e-8 1e-8 0 0</values>
</curve>
</curves>
<process_variables>
<process_variable>
<name>pressure</name>
<components>1</components>
<order>1</order>
<initial_condition>p0</initial_condition>
<boundary_conditions>
<boundary_condition>
<mesh>RadionuclideSorption_left</mesh>
<type>Neumann</type>
<parameter>p_Neumann_left</parameter>
</boundary_condition>
<boundary_condition>
<mesh>RadionuclideSorption_right</mesh>
<type>Dirichlet</type>
<parameter>p_Dirichlet_right</parameter>
</boundary_condition>
</boundary_conditions>
</process_variable>
<process_variable>
<name>Na</name>
<components>1</components>
<order>1</order>
<initial_condition>c0_Na</initial_condition>
<boundary_conditions>
<boundary_condition>
<mesh>RadionuclideSorption_left</mesh>
<type>Dirichlet</type>
<parameter>c_left_Na</parameter>
</boundary_condition>
</boundary_conditions>
</process_variable>
<process_variable>
<name>Cl</name>
<components>1</components>
<order>1</order>
<initial_condition>c0_Cl</initial_condition>
<boundary_conditions>
<boundary_condition>
<mesh>RadionuclideSorption_left</mesh>
<type>Dirichlet</type>
<parameter>c_left_Cl</parameter>
</boundary_condition>
</boundary_conditions>
</process_variable>
<process_variable>
<name>Ca</name>
<components>1</components>
<order>1</order>
<initial_condition>c0_Ca</initial_condition>
<boundary_conditions>
<boundary_condition>
<mesh>RadionuclideSorption_left</mesh>
<type>Dirichlet</type>
<parameter>c_left_Ca</parameter>
</boundary_condition>
</boundary_conditions>
</process_variable>
<process_variable>
<name>C(4)</name>
<components>1</components>
<order>1</order>
<initial_condition>c0_C(4)</initial_condition>
<boundary_conditions>
<boundary_condition>
<mesh>RadionuclideSorption_left</mesh>
<type>Dirichlet</type>
<parameter>c_left_C(4)</parameter>
</boundary_condition>
</boundary_conditions>
</process_variable>
<process_variable>
<name>H</name>
<components>1</components>
<order>1</order>
<initial_condition>c0_H</initial_condition>
<boundary_conditions>
<boundary_condition>
<mesh>RadionuclideSorption_left</mesh>
<type>Dirichlet</type>
<parameter>c_left_H</parameter>
</boundary_condition>
</boundary_conditions>
</process_variable>
<!--Radionuclides-->
<process_variable>
<name>U(6)</name>
<components>1</components>
<order>1</order>
<initial_condition>c0</initial_condition>
<boundary_conditions>
<boundary_condition>
<mesh>RadionuclideSorption_left</mesh>
<type>Dirichlet</type>
<parameter>c_left_default</parameter>
</boundary_condition>
</boundary_conditions>
</process_variable>
</process_variables>
<nonlinear_solvers>
<nonlinear_solver>
<name>basic_picard</name>
<type>Picard</type>
<max_iter>10</max_iter>
<linear_solver>general_linear_solver</linear_solver>
</nonlinear_solver>
</nonlinear_solvers>
<linear_solvers>
<linear_solver>
<name>general_linear_solver</name>
<lis>-i bicgstab -p ilut -tol 1e-8 -maxiter 20000</lis>
<eigen>
<solver_type>BiCGSTAB</solver_type>
<precon_type>ILUT</precon_type>
<max_iteration_step>10000</max_iteration_step>
<error_tolerance>1e-12</error_tolerance>
</eigen>
<petsc>
<prefix>hc</prefix>
<parameters>-hc_ksp_type bcgs -hc_pc_type bjacobi -hc_ksp_rtol 1e-8 -hc_ksp_max_it 20000</parameters>
</petsc>
</linear_solver>
</linear_solvers>
<test_definition>
<vtkdiff>
<regex>RadionuclideSorption_ts_[0-9]*_t_[0-9]*.000000.vtu</regex>
<field>pressure</field>
<absolute_tolerance>1e-6</absolute_tolerance>
<relative_tolerance>1e-10</relative_tolerance>
</vtkdiff>
<vtkdiff>
<regex>RadionuclideSorption_ts_[0-9]*_t_[0-9]*.000000.vtu</regex>
<field>Na</field>
<absolute_tolerance>1e-10</absolute_tolerance>
<relative_tolerance>1e-16</relative_tolerance>
</vtkdiff>
<vtkdiff>
<regex>RadionuclideSorption_ts_[0-9]*_t_[0-9]*.000000.vtu</regex>
<field>Cl</field>
<absolute_tolerance>1e-10</absolute_tolerance>
<relative_tolerance>1e-16</relative_tolerance>
</vtkdiff>
<vtkdiff>
<regex>RadionuclideSorption_ts_[0-9]*_t_[0-9]*.000000.vtu</regex>
<field>Ca</field>
<absolute_tolerance>1e-10</absolute_tolerance>
<relative_tolerance>1e-16</relative_tolerance>
</vtkdiff>
<vtkdiff>
<regex>RadionuclideSorption_ts_[0-9]*_t_[0-9]*.000000.vtu</regex>
<field>C(4)</field>
<absolute_tolerance>1e-10</absolute_tolerance>
<relative_tolerance>1e-16</relative_tolerance>
</vtkdiff>
<vtkdiff>
<regex>RadionuclideSorption_ts_[0-9]*_t_[0-9]*.000000.vtu</regex>
<field>H</field>
<absolute_tolerance>1e-10</absolute_tolerance>
<relative_tolerance>1e-16</relative_tolerance>
</vtkdiff>
<vtkdiff>
<regex>RadionuclideSorption_ts_[0-9]*_t_[0-9]*.000000.vtu</regex>
<field>U(6)</field>
<absolute_tolerance>1e-10</absolute_tolerance>
<relative_tolerance>1e-16</relative_tolerance>
</vtkdiff>
</test_definition>
</OpenGeoSysProject>
Tests/Data/Parabolic/ComponentTransport/ReactiveTransport/SurfaceComplexation/LookupTable/RadionuclideSorption.vtu 0 → 100644
+ 23
− 0
View file @ fc0e0988
<?xml version="1.0"?>
<VTKFile type="UnstructuredGrid" version="0.1" byte_order="LittleEndian" header_type="UInt32">
<UnstructuredGrid>
<Piece NumberOfPoints="76" NumberOfCells="75" >
<PointData>
</PointData>
<CellData>
<DataArray type="Int32" Name="MaterialIDs" format="appended" RangeMin="0" RangeMax="0" offset="0" />
</CellData>
<Points>
<DataArray type="Float64" Name="Points" NumberOfComponents="3" format="appended" RangeMin="0" RangeMax="15" offset="408" />
</Points>
<Cells>
<DataArray type="Int64" Name="connectivity" format="appended" RangeMin="" RangeMax="" offset="2848" />
<DataArray type="Int64" Name="offsets" format="appended" RangeMin="" RangeMax="" offset="4456" />
<DataArray type="UInt8" Name="types" format="appended" RangeMin="" RangeMax="" offset="5264" />
</Cells>
</Piece>
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Tests/Data/Parabolic/ComponentTransport/ReactiveTransport/SurfaceComplexation/LookupTable/RadionuclideSorption_ts_92_t_92000.000000.vtu 0 → 100644
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View file @ fc0e0988
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Tests/Data/Parabolic/ComponentTransport/ReactiveTransport/SurfaceComplexation/LookupTable/table.txt 0 → 100644
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View file @ fc0e0988
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