[ci] Run jupyter tests in regular (osmesa) container.

Rendering backend can be set via:

    import pyvista as pv

    pv.set_jupyter_backend('ipyvtklink') # default
    pv.set_jupyter_backend('pythreejs')
    pv.set_jupyter_backend('static')

[PL/CT] chemical speciation parallelization

See merge request ogs/ogs!4106

[cpm] Removed MPI dependencies in vtk.

Closes #3289

See merge request ogs/ogs!4129

When using VTK_USE_MPI vtk enables its internal hdf5 which clashes with our hdf5 added via cpm.

Hdf 1.12.1

See merge request ogs/ogs!4114

Use only MKLs OpenMP implementation

Closes ufz-bgr/hpc/docs#20

See merge request ogs/ogs!4132

Lars Bilke authored 2 years ago and Dmitri Naumov committed 2 years ago

1.12.1 does not configure:

CMake Error at /Users/gitlab/.cache/CPM/hdf5/649b87dcc272c7b4f9bc56f47cb3642f726a9ae1/config/cmake/ConfigureChecks.cmake:334 (file):
  file failed to open for reading (No such file or directory):
    /Users/gitlab/builds/EzxqkLzX/0/ogs/build/release-all/pac_Cconftest.out

Lars Bilke authored 2 years ago and Dmitri Naumov committed 2 years ago

This otherwise pulls in libgomp dependency.

Minor improvements in MathLib/PETSc

See merge request ogs/ogs!4128

files

and set explicit comparison to null pointer in several if-condition.

Jupyter Notebook point heat source

See merge request ogs/ogs!4109

A new test for createQuadraticOrderMesh

See merge request ogs/ogs!4127

[jupyter] gmsh and msh2vtu

See merge request ogs/ogs!4126

[T] Relax tolerances in heat_pipe_strict.prj for CI.

See merge request ogs/ogs!4125

Ubuntu only failed with: capillary_pressure in one vtu.

[web] Added Lu et al 2022 paper.

See merge request ogs/ogs!4124