Clang format run on near-the-header lines.

Happy New Year

Especially on iterator types and 'new' allocations.

FileIO -> MeshLib::IO.

In order to make OGS more modular:
- The {read/write}Mesh{From/To}File.{h,cpp} are moved from FileIO to MeshLib/IO.
- The FileIO/Legacy folder was moved to MeshLib/IO/Legacy.
- Include paths are changed according the changes above.

Test output files are written to ${CMAKE_BUILD_DIR}/Tests/Data.

As a WIP data files have to be in ${CMAKE_SOURCE_DIR}../data

The results of this test are also included.

Corrected also the include paths for files in MathLib folder and SimpleTests/MatrixTests/ folder.

This is automatic replacement with
ag '(?<!std::)size_t(?!\w)' --ignore-dir=ThirdParty -l | xargs perl -pi.bak -e  's/(?<!std::)size_t(?!\w)/std::size_t/g'

Ancient versions of CMake required else(), endif(), and similar block
termination commands to have arguments matching the command starting the
block.  This is no longer the preferred style.

Run the following shell code:

for c in else endif endforeach endfunction endmacro endwhile; do
    echo 's/\b'"$c"'\(\s*\)(.\+)/'"$c"'\1()/'
done >convert.sed &&
git ls-files -z -- bootstrap '*.cmake' '*.cmake.in' '*CMakeLists.txt' |
egrep -z -v '^(Utilities/cm|Source/kwsys/)' |
egrep -z -v 'Tests/CMakeTests/While-Endwhile-' |
xargs -0 sed -i -f convert.sed &&
rm convert.sed

Ancient CMake versions required upper-case commands. Later command
names became case-insensitive. Now the preferred style is lower-case.

Run the following shell code:

cmake --help-command-list |
grep -v "cmake version" |
while read c; do
    echo 's/\b'"$(echo $c | tr '[:lower:]' '[:upper:]')"'\(\s*\)(/'"$c"'\1(/g'
done >convert.sed &&
git ls-files -z -- bootstrap '*.cmake' '*.cmake.in' '*CMakeLists.txt' |
egrep -z -v '^(Utilities/cm|Source/kwsys/)' |
xargs -0 sed -i -f convert.sed &&
rm convert.sed