In cases when the underlying element is quadratic but the shape function
is of linear order, there is a dimension mismatch between the
NodalVectorType and the return value of the getNodalValuesOnElement.

Taking the first rows of the return matrix ensures correct dimensions.

Convert to linear mesh tests

Previously the conversion relied on the node numbering,
which is not necessary.

2D_Adaptive_dt_ThermalConvection_constviscosityStaggeredScheme
sporadically runs into the 900 s timeout on vismac05.
Increased to 1800 s.

[CL] Use ostream for all output operators.

[MatL/MPL] Check uniqueness of components and phases

CPPCheck warning fixes

[HT] Use const vars for sizes and indexes in local assembly.

Since at least gcc-9.1 the original code didn't compile
any longer with error message:
computeSurfaceNodeIDsInPolygonalRegion.cpp:147:48: error: converting to ‘const GeoLib::Polygon’ from initializer list would use explicit constructor ‘GeoLib::Polygon::Polygon(const GeoLib::Polyline&, bool)’
  147 |         GeoLib::Polygon const& polygon{*plys[j]};
      |                                                ^

From reference_initialization page of cppreference.com:
Lifetime of a temporary:
...
 - a temporary bound to a reference member in a constructor initializer list persists only until the constructor exits, not as long as the object exists. (note: such initialization is ill-formed as of DR 1696).

Can now be used via singularity.

https://www.opengeosys.org/docs/userguide/post-processing/paraview-on-eve

Also use own findElementOrError() algorithm.

CPPCheck warning type: redundantAssignment.

Either by renaming or removing the variable or adding
an extra scope to the top variable.

CPPCheck warning type: shadowVar.

CPPCheck warning type: unusedVariable.

CPPCheck warning type: variableScope.

Clang minimal image was outdated and is not required anymore.
On the old image an old Conan version was installed which had
this bug:

https://github.com/conan-io/conan/issues/5055

Which lead Sanitizer-jobs to fail...

Johannes Herfurth authored 5 years ago and Dmitri Naumov committed 5 years ago

Selection of tests published in the benchmark-books

Include some suppressions for python, omp, and ld_load.

Add an optional chemical formula flag under the subtree of kinetic reactant

Eve deploy fix

Currently tested on eve. Docker uses 7.4.