ComponentTransportProcess.cpp

/**
 * \copyright
 * Copyright (c) 2012-2018, OpenGeoSys Community (http://www.opengeosys.org)
 *            Distributed under a Modified BSD License.
 *              See accompanying file LICENSE.txt or
 *              http://www.opengeosys.org/project/license
 *
 */

#include "ComponentTransportProcess.h"

#include <cassert>

// TODO used for output, if output classes are ready this has to be changed
#include "MeshLib/IO/writeMeshToFile.h"

#include "ProcessLib/CalculateSurfaceFlux/CalculateSurfaceFlux.h"

#include "ProcessLib/Utils/CreateLocalAssemblers.h"

namespace ProcessLib
{
namespace ComponentTransport
{
ComponentTransportProcess::ComponentTransportProcess(
    MeshLib::Mesh& mesh,
    std::unique_ptr<ProcessLib::AbstractJacobianAssembler>&& jacobian_assembler,
    std::vector<std::unique_ptr<ParameterBase>> const& parameters,
    unsigned const integration_order,
    std::vector<std::vector<std::reference_wrapper<ProcessVariable>>>&&
        process_variables,
    ComponentTransportProcessData&& process_data,
    SecondaryVariableCollection&& secondary_variables,
    NumLib::NamedFunctionCaller&& named_function_caller,
    bool const use_monolithic_scheme,
    std::unique_ptr<MeshLib::Mesh>&& balance_mesh,
    std::string&& balance_pv_name, std::string&& balance_out_fname)
    : Process(mesh, std::move(jacobian_assembler), parameters,
              integration_order, std::move(process_variables),
              std::move(secondary_variables), std::move(named_function_caller),
              use_monolithic_scheme),
      _process_data(std::move(process_data)),
      _balance_mesh(std::move(balance_mesh)),
      _balance_pv_name(std::move(balance_pv_name)),
      _balance_out_fname(std::move(balance_out_fname))
{
}

void ComponentTransportProcess::initializeConcreteProcess(
    NumLib::LocalToGlobalIndexMap const& dof_table,
    MeshLib::Mesh const& mesh,
    unsigned const integration_order)
{
    const int process_id = 0;
    ProcessLib::ProcessVariable const& pv = getProcessVariables(process_id)[0];
    ProcessLib::createLocalAssemblers<LocalAssemblerData>(
        mesh.getDimension(), mesh.getElements(), dof_table,
        pv.getShapeFunctionOrder(), _local_assemblers,
        mesh.isAxiallySymmetric(), integration_order, _process_data);

    _secondary_variables.addSecondaryVariable(
        "darcy_velocity",
        makeExtrapolator(
            mesh.getDimension(), getExtrapolator(), _local_assemblers,
            &ComponentTransportLocalAssemblerInterface::getIntPtDarcyVelocity));
}

void ComponentTransportProcess::assembleConcreteProcess(
    const double t,
    GlobalVector const& x,