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Dmitri Naumov
ogs
Commits
540d0b45
Verified
Commit
540d0b45
authored
4 years ago
by
Lars Bilke
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[T] Replaced AddFaultToVoxelGrid tests with workflow.
parent
a5442d7d
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.gitignore
+2
-0
2 additions, 0 deletions
.gitignore
Applications/Utils/Tests.cmake
+10
-37
10 additions, 37 deletions
Applications/Utils/Tests.cmake
Applications/Utils/VoxelGridFromLayers.smk
+77
-0
77 additions, 0 deletions
Applications/Utils/VoxelGridFromLayers.smk
with
89 additions
and
37 deletions
.gitignore
+
2
−
0
View file @
540d0b45
...
@@ -24,3 +24,5 @@ Tests/Data/Parabolic/HT/InvalidProjectFiles/*.prj
...
@@ -24,3 +24,5 @@ Tests/Data/Parabolic/HT/InvalidProjectFiles/*.prj
web/.netlify
web/.netlify
CMakeUserPresets.json
CMakeUserPresets.json
.snakemake
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Applications/Utils/Tests.cmake
+
10
−
37
View file @
540d0b45
...
@@ -301,14 +301,17 @@ AddTest(
...
@@ -301,14 +301,17 @@ AddTest(
if
(
SNAKEMAKE AND NOT OGS_USE_MPI
)
if
(
SNAKEMAKE AND NOT OGS_USE_MPI
)
add_test
(
NAME snakemake_ExtractBoundary
add_test
(
NAME snakemake_ExtractBoundary
COMMAND
${
SNAKEMAKE
}
COMMAND
${
SNAKEMAKE
}
-j 1
-j 1
--configfile
${
PROJECT_BINARY_DIR
}
/buildinfo.yaml
--configfile
${
PROJECT_BINARY_DIR
}
/buildinfo.yaml
-s
${
CMAKE_CURRENT_SOURCE_DIR
}
/ExtractBoundary.smk
-s
${
CMAKE_CURRENT_SOURCE_DIR
}
/ExtractBoundary.smk
)
)
endif
()
if
(
SNAKEMAKE
)
add_test
(
NAME snakemake_VoxelGridFromLayers
add_dependencies
(
ctest ExtractBoundary
)
COMMAND
${
SNAKEMAKE
}
-j 1
--configfile
${
PROJECT_BINARY_DIR
}
/buildinfo.yaml
-s
${
CMAKE_CURRENT_SOURCE_DIR
}
/VoxelGridFromLayers.smk
)
add_dependencies
(
ctest ExtractBoundary Layers2Grid AddFaultToVoxelGrid
)
endif
()
endif
()
AddTest
(
AddTest
(
...
@@ -545,33 +548,3 @@ AddTest(
...
@@ -545,33 +548,3 @@ AddTest(
DIFF_DATA
DIFF_DATA
PrismBHE_elev.vtu
PrismBHE_elev.vtu
)
)
MeshTest
(
NAME Layers2Grid_Iso_Test
PATH MeshLib
WORKING_DIRECTORY
${
Data_SOURCE_DIR
}
/MeshLib
EXECUTABLE Layers2Grid
EXECUTABLE_ARGS -i AREHS_test_layers.txt -o
${
Data_BINARY_DIR
}
/MeshLib/AREHS_test_iso.vtu -x 500
REQUIREMENTS NOT OGS_USE_MPI
DIFF_DATA AREHS_test_iso.vtu AREHS_test_iso.vtu 1e-16
)
MeshTest
(
NAME Layers2Grid_Test
PATH MeshLib
WORKING_DIRECTORY
${
Data_SOURCE_DIR
}
/MeshLib
EXECUTABLE Layers2Grid
EXECUTABLE_ARGS -i AREHS_test_layers.txt -o
${
Data_BINARY_DIR
}
/MeshLib/AREHS_test.vtu -x 500 -y 300 -z 100
REQUIREMENTS NOT OGS_USE_MPI
DIFF_DATA AREHS_test.vtu AREHS_test.vtu 1e-16
)
MeshTest
(
NAME AddFaultToVoxelGrid_Test
PATH MeshLib
WORKING_DIRECTORY
${
Data_SOURCE_DIR
}
/MeshLib
EXECUTABLE AddFaultToVoxelGrid
EXECUTABLE_ARGS -i AREHS_test.vtu -f AREHS_fault.vtu -o
${
Data_BINARY_DIR
}
/MeshLib/AREHS_test_fault.vtu
REQUIREMENTS NOT OGS_USE_MPI
DIFF_DATA AREHS_test_fault.vtu AREHS_test_fault.vtu 1e-16
)
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Click to expand it.
Applications/Utils/VoxelGridFromLayers.smk
0 → 100644
+
77
−
0
View file @
540d0b45
# Usage, e.g.:
# snakemake -s VoxelGridFromLayers.smk -j 1 --configfile $HOME/code/ogs6/build/buildinfo.yaml
#
# buildinfo.yaml contains variables such as Data_BINARY_DIR
import os
os.environ["PATH"] += os.pathsep + os.pathsep.join([config['BIN_DIR']])
workdir: f"{config['Data_SOURCE_DIR']}/MeshLib"
out_dir = f"{config['Data_BINARY_DIR']}/MeshLib"
rule all:
input:
f"{out_dir}/AREHS_test_diff_geometry.out",
f"{out_dir}/AREHS_test_fault_diff_material_ids.out",
f"{out_dir}/AREHS_test_fault_diff_geometry.out",
f"{out_dir}/AREHS_test_iso_diff_geometry.out"
rule layers_to_grid:
input:
"AREHS_test_layers.txt"
output:
f"{out_dir}/AREHS_test.vtu"
shell:
"Layers2Grid -i {input} -o {output} -x 500 -y 300 -z 100"
rule vtkdiff_grid_geometry:
input:
out = rules.layers_to_grid.output,
ref = "AREHS_test.vtu"
output:
f"{out_dir}/AREHS_test_diff_geometry.out"
shell:
"vtkdiff -m {input.out} {input.ref} > {output}"
rule add_fault_to_grid:
input:
grid = rules.layers_to_grid.output,
fault = "AREHS_fault.vtu"
output:
f"{out_dir}/AREHS_test_fault.vtu"
shell:
"AddFaultToVoxelGrid -i {input.grid} -f {input.fault} -o {output}"
rule vtkdiff_material_ids:
input:
out = rules.add_fault_to_grid.output,
ref = "AREHS_test_fault.vtu"
output:
f"{out_dir}/AREHS_test_fault_diff_material_ids.out"
shell:
"vtkdiff -a MaterialIDs -b MaterialIDs {input.out} {input.ref} > {output}"
rule vtkdiff_fault_geometry:
input:
out = rules.add_fault_to_grid.output,
ref = "AREHS_test_fault.vtu"
output:
f"{out_dir}/AREHS_test_fault_diff_geometry.out"
shell:
"vtkdiff -m {input.out} {input.ref} > {output}"
rule layers_to_grid_iso:
input:
"AREHS_test_layers.txt"
output:
f"{out_dir}/AREHS_test_iso.vtu"
shell:
"Layers2Grid -i {input} -o {output} -x 500"
rule vtkdiff_grid_iso_geometry:
input:
out = rules.layers_to_grid_iso.output,
ref = "AREHS_test_iso.vtu"
output:
f"{out_dir}/AREHS_test_iso_diff_geometry.out"
shell:
"vtkdiff -m {input.out} {input.ref} > {output}"
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