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Commit c465fa72 authored by Ricardo Wurmus's avatar Ricardo Wurmus
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gnu: Add biomaRt.

* gnu/packages/bioinformatics.scm (r-biomart): New variable.
parent 8b7bce74
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......@@ -3515,6 +3515,36 @@ (define-public r-annotationdbi
annotation data packages using SQLite data storage.")
(license license:artistic2.0)))
(define-public r-biomart
(package
(name "r-biomart")
(version "2.26.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "biomaRt" version))
(sha256
(base32
"1s709055abj2gd35g6nnk5d2ai5ii09iir270l2xika6pi62gj3f"))))
(properties
`((upstream-name . "biomaRt")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-rcurl" ,r-rcurl)
("r-xml" ,r-xml)))
(home-page "http://bioconductor.org/packages/biomaRt")
(synopsis "Interface to BioMart databases")
(description
"biomaRt provides an interface to a growing collection of databases
implementing the @url{BioMart software suite, http://www.biomart.org}. The
package enables retrieval of large amounts of data in a uniform way without
the need to know the underlying database schemas or write complex SQL queries.
Examples of BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene,
Wormbase and dbSNP mapped to Ensembl. These major databases give biomaRt
users direct access to a diverse set of data and enable a wide range of
powerful online queries from gene annotation to database mining.")
(license license:artistic2.0)))
(define-public r-qtl
(package
(name "r-qtl")
......
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