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Unverified Commit fc47c7d6 authored by Ricardo Wurmus's avatar Ricardo Wurmus
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gnu: Add r-bsgenome-celegans-ucsc-ce10.

* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10): New
variable.
parent 6a4cbc6f
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...@@ -6929,6 +6929,38 @@ (define-public r-bsgenome-celegans-ucsc-ce6 ...@@ -6929,6 +6929,38 @@ (define-public r-bsgenome-celegans-ucsc-ce6
objects.") objects.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-bsgenome-celegans-ucsc-ce10
(package
(name "r-bsgenome-celegans-ucsc-ce10")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "http://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Celegans.UCSC.ce10_"
version ".tar.gz"))
(sha256
(base32
"1zaym97jk4npxk14ifvwz2rvhm4zx9xgs33r9vvx9rlynp0gydrk"))))
(properties
`((upstream-name . "BSgenome.Celegans.UCSC.ce10")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"http://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce10/")
(synopsis "Full genome sequences for Worm")
(description
"This package provides full genome sequences for Caenorhabditis
elegans (Worm) as provided by UCSC (ce10, Oct 2010) and stored in Biostrings
objects.")
(license license:artistic2.0)))
(define-public r-bsgenome-dmelanogaster-ucsc-dm3 (define-public r-bsgenome-dmelanogaster-ucsc-dm3
(package (package
(name "r-bsgenome-dmelanogaster-ucsc-dm3") (name "r-bsgenome-dmelanogaster-ucsc-dm3")
......
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