* gnu/packages/enlightenment.scm (terminology): Update to 1.9.0.
[arguments]: Add configure-flag to find more binaries.

Fixes <http://bugs.gnu.org/35004

>.

* doc/guix.texi (Invoking guix package): Fix typo.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>

* gnu/packages/bioinformatics.scm (freebayes)[source]: Update to new
upstream URI.
[home-page]: Same.

* gnu/packages/gnome.scm (terminator)[description): Remove stray '+'.

* gnu/packages/bioinformatics.scm (freebayes)[native-inputs]: Remove
vcflib-source, intervaltree-source. Move vcflib ...
[inputs]: ... to here.
[arguments]: Adjust 'patch-source and 'unpack-submodule-sources for
changes in vendored code.
* gnu/packages/patches/freebayes-devendor-deps.patch: Update patch.

* gnu/packages/bioinformatics.scm (vcflib)[arguments]: Add phase to
create pkg-config file.

* gnu/packages/bioinformatics.scm (vcflib)[arguments]: Add phase to
build a shared library instead of a static one.

* gnu/packages/bioinformatics.scm (freebayes)[arguments]: Use custom
'check phase  on aarch64-linux and armhf-linux to extend the test timeout.

* gnu/packages/xorg.scm (xpra)[inputs]: Add libx264, x265, libvpx.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

* gnu/packages/xorg.scm (xpra): Update to 4.0.6.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

* gnu/packages/mp3.scm (libid3tag)[arguments]: Add a comment about Audacity
requiring a pkg-config file for libid3tag.

* gnu/packages/mp3.scm (libmad)[arguments]: Add a comment about Audacity
requiring a pkg-config file for libmad.

* gnu/packages/guile-xyz.scm (guile-libyaml): New variable.

* gnu/packages/bioinformatics.scm (r-snapatac): New variable.

* gnu/packages/bioinformatics.scm (mafft): Update to 7.475.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

* gnu/packages/musl.scm (musl): Update to 1.2.2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

This package is widely known in select circles specifically as 'bio-vcf'.

* gnu/packages/bioinformatics.scm (ruby-bio-vcf): Rename to bio-vcf.

* gnu/packages/bioinformatics.scm (ruby-bio-vcf): New variable.

* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.252.
(linux-libre-4.4-pristine-source): Update hash.

* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.252.
(linux-libre-4.9-pristine-source): Update hash.

* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.216.
(linux-libre-4.14-pristine-source): Update hash.

* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.168.
(linux-libre-4.19-pristine-source): Update hash.

* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.90.
(linux-libre-5.4-pristine-source): Update hash.

* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.8.
(linux-libre-5.10-pristine-source): Update hash.

* gnu/packages/search.scm (xapian, python-xapian-bindings): Update to 1.4.18.

* gnu/packages/linux.scm (iptables): Update to 1.8.7.

* gnu/packages/linux.scm (nftables): Update to 0.9.8.

* gnu/packages/linux.scm (libnftnl): Update to 1.1.9.

* gnu/packages/education.scm (ktouch): Update to 20.12.1.

* gnu/packages/maths.scm (wxmaxima): Update to 20.12.2.
[arguments]: Remove #:test-target and disable tests.  Remove 'pre-check
phase.
[native-inputs]: Remove xorg-server-for-tests.
[inputs]: Add libomp.

* gnu/packages/maths.scm (gnuplot): Update to 5.4.1.
[arguments]: Set GNUTERM in #:make-flags.

* gnu/packages/emacs-xyz.scm (emacs-org-mime): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

* gnu/packages/networking.scm (nbd): Update to 3.21.

* gnu/packages/mail.scm (mblaze): Update to 1.1.

* gnu/packages/password-utils.scm (keepassxc): Update to 2.6.3.

* gnu/packages/admin.scm (facter): Update to 4.0.49.

* gnu/packages/admin.scm (inxi-minimal): Update to 3.2.02-2.

* gnu/packages/shells.scm (oil): Update to 0.8.6.

* gnu/packages/music.scm (pd): Update to 0.51-4.

* gnu/packages/gnome.scm (libhandy): Update to 1.0.3.