* gnu/packages/emacs-xyz.scm (emacs-forge): Update to 09bf8ad.
[native-inputs]: Remove emacs-minimal, which is implicitly provided by the
emacs-build-system.

This is necessary to build a recent version of emacs-forge.

* gnu/packages/emacs-xyz.scm (emacs-transient): Update to commit a6e4cced.
[build-system]: Switch to the emacs-build-system.
[arguments]: Remove the #:modules, #:imported-modules and #:make-flags
arguments.
[phases]{configure}: Do not delete.
{install}: Do not replace.
{build-info-manual}: New phase.
{enter-lisp-directory}: New phase.
[native-inputs]: Remove emacs-minimal, which is implicitly provided by the
emacs-build-system.

This resolves tests failures that appeared with the update to emacs-magit.

* gnu/packages/emacs-xyz.scm (emacs-evil-magit): Update to commit 253c644.

* gnu/packages/emacs-xyz.scm (emacs-magit): Update to commit
68b5a13fa1b6b122d4a2547b8c415aadff83d8ca.
[origin]: Remove obsoleted patches and snippets.
[build-system]: Switch to the emacs-build-system.
[arguments]: Remove the #:modules and #:imported-modules arguments.  Enable
tests. Remove the #:make-flags and #:test-target argument.  Specify the
\#:test-command argument.
[phases]{patch}: Remove phase.
{build-info-manual, set-magit-version, configure-git}
{disable-tramp-test}: New phases.
{configure}: Do not delete phase.
{patch-exec-paths}: Adapt file names.
* gnu/packages/patches/emacs-magit-log-format-author-margin.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Unregister it.

* gnu/packages/emacs-xyz.scm (emacs-libgit): New variable.
* gnu/packages/patches/emacs-libgit-use-system-libgit2.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patch.

* gnu/packages/guile-xyz.scm (guile-rdf): New variable.

* gnu/packages/dns.scm (knot): Update to 2.9.5.

* gnu/packages/version-control.scm (fossil): Update to 2.11.

* gnu/packages/backup.scm (wimlib): Update to 1.13.2.

* gnu/packages/web.scm (nginx-documentation): Update to 1.19.0-2549-c13a55aae487.

* gnu/packages/web.scm (nginx): Update to 1.19.0.

* gnu/packages/admin.scm (nnn): Update to 3.2.

* gnu/packages/music.scm (yoshimi): Update to 1.7.0.1-0.bfcadc6.
[source]: Use GIT-FETCH for now.

* gnu/packages/maths.scm (nauty): Update to 2.7r1.
[arguments]: Prevent using "-march-native".  Install new executable.

* gnu/packages/version-control.scm (aegis)[home-page]: Update and use
HTTPS.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>

* gnu/packages/version-control.scm (aegis)[arguments]: Add
‘CXXFLAGS=-std=c++03’ to #:configure-flags.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>

* gnu/packages/music.scm (lsp-plugins): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

* gnu/packages/java.scm (java-xerces): Update to 2.12.1.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>

* gnu/packages/xml.scm (xerces-c): Update to 3.2.3.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>

* gnu/packages/monitoring.scm (nagios): Update to 4.4.6.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>

* gnu/packages/version-control.scm (gitolite): Update to 3.6.11.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>

* gnu/packages/dns.scm (unbound): Update to 1.10.1.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>

* gnu/packages/admin.scm (ansible): Update to 2.9.9.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>

* gnu/packages/engineering.scm (radare2)[arguments]:
Add ‘--with-sysxxhash’ to #:configure-flags.
[inputs]: Add libuv.
[propagated-inputs]: Add xxhash.

* gnu/packages/engineering.scm (radare2)[inputs]: Remove gmp.

* gnu/packages/linux.scm (gpm)[home-page, source]: Use HTTPS URI.

* gnu/packages/dictionaries.scm (gcide)[home-page]: Use HTTPS URI.

* gnu/packages/engineering.scm (fasthenry)[home-page]: Use HTTPS URI.

* gnu/packages/engineering.scm (fastcap)[home-page]: Use HTTPS URI.

* gnu/packages/emacs-xyz.scm (emacs-ryo-modal)[home-page]: Use HTTPS URI.

* gnu/packages/emacs-xyz.scm (emacs-load-relative)[home-page]: Use HTTPS URI.

* gnu/packages/emacs-xyz.scm (emacs-evil-markdown): Update to 0.0.2-2-685d7fb.

* gnu/packages/emacs-xyz.scm (emacs-evil-markdown)[propagated-inputs]:
Re-order inputs.
[home-page]: Fix URL.

* gnu/packages/dvtm.scm (dvtm)[home-page]: Use HTTPS URI.

* gnu/packages/bioinformatics.scm (blast+)[home-page]: Use HTTPS URI.

* gnu/packages/game-development.scm (catcodec)[home-page]: Use HTTPS URI.

* gnu/packages/bioinformatics.scm (bbmap)[home-page]: Use HTTPS URI.

* gnu/packages/emacs-xyz.scm (emacs-chronometrist): Update to 0.4.3.

* gnu/packages/education.scm (fet): Update to 5.44.7.

* gnu/packages/finance.scm (flowee): Update to 2020.04.1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>