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[T] update and polish some CT and RT jupyter notebooks

Lifting 3 jupyter notebooks to our latest standard regarding post-processing, i.e. replacing vtuIO usage with ogstools and using its Project interface for running simulations instead of calling OGS via subprocess. Also adding some assertions and improving the plotting.

  • DiffusionSorptionDecay.py
  • MultiLayerDiffusion.py
  • RadionuclidesMigration.py

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