acidification in a calcite interlayer Jupyter notebook

MostafaMollaalirequested to merge
MostafaMollaali/dynamic:Acidification into master

Adds a Jupyter notebook for acidification in a calcite interlayer benchmark (Lu et al., 2022; Mollaali et al., 2025).

Executes the full 1D workflow; 2D meshes and .prj are included (automatically) but not run to limit computational cost. Reproducing 2D requires only switching the dimension (1d → 2d); no further input changes are needed.

Simulations use OGS configured with PETSc linear/nonlinear solvers.

The Jupyter notebook documents PHREEQC speciation and calcite-dissolution kinetics in .prj.

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