[ci] update ci to use renv

.gitlab-ci.yml

@@ -6,21 +6,18 @@ stages:
   - test
 
 test:
-  image: $CI_REGISTRY_IMAGE:09092022
+  image: $CI_REGISTRY_IMAGE:24032023
   stage: test
   tags:
     - envinf2
   variables:
-    R_LIBS_USER: "$CI_PROJECT_DIR/ci/lib/"
-    RETICULATE_MINICONDA_PATH: "/root/.local/share/r-miniconda/" #default path
+    RETICULATE_MINICONDA_PATH: "/root/.local/share/r-miniconda/"
     RETICULATE_PYTHON_ENV: "/root/.local/share/r-miniconda/envs/r-reticulate/"
+    RENV_CONFIG_EXTERNAL_LIBRARIES: "/usr/local/lib/R/site-library:/usr/local/lib/R/library"
+    RENV_PATHS_LIBRARY: "$CI_PROJECT_DIR/ci/renv/library"
   script:
-    - if [ ! -d "$R_LIBS_USER" ]; then mkdir -p "$R_LIBS_USER"; fi
-    - R -e 'withr::with_libpaths(new = Sys.getenv("R_LIBS_USER"), devtools::install_deps(dependencies = T))'
-    # checks if the packages from the Imports, Suggests, LinkinTo field
-    # are already installed in the cache
-    - R -e '.libPaths(new = Sys.getenv("R_LIBS_USER"))'
-    - R -e 'withr::with_libpaths(new = Sys.getenv("R_LIBS_USER"), {install.packages("BiocManager"); BiocManager::install("rhdf5")})'
+    # Install deps or load from renv cache
+    - R -e 'renv::restore()'
     # Build and Check r2ogs6
     - R CMD build . --no-build-vignettes --no-manual
     - R CMD check $(ls -1t *.tar.gz | head -n 1) --no-build-vignettes --no-manual
@@ -31,7 +28,7 @@ test:
     key: "$CI_COMMIT_REF_SLUG"
     untracked: true
     paths:
-      - "$R_LIBS_USER"
+      - "$RENV_PATHS_LIBRARY"
   rules:
     - if: '$CI_PIPELINE_SOURCE == "merge_request_event" || $CI_PIPELINE_SOURCE == "web"'
     - if: '$CI_COMMIT_BRANCH == "master"'
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