[ci] update test ci

.gitlab-ci.yml

@@ -14,10 +14,15 @@ test:
     RETICULATE_MINICONDA_PATH: "/root/.local/share/r-miniconda/"
     RETICULATE_PYTHON_ENV: "/root/.local/share/r-miniconda/envs/r-reticulate/"
     RENV_CONFIG_EXTERNAL_LIBRARIES: "/usr/local/lib/R/site-library:/usr/local/lib/R/library"
-    RENV_PATHS_LIBRARY: "$CI_PROJECT_DIR/ci/renv/library"
+    RENV_PATHS_CACHE: "$CI_PROJECT_DIR/cache"
+    RENV_PATHS_LIBRARY: "$CI_PROJECT_DIR/renv/library"
+  before_script:
+    # Install deps or load from renv
+    - R -e "if (!requireNamespace('renv', quietly = TRUE)) install.packages('renv')"
+    #- R -e 'renv::restore()'
+    - R -e 'renv::install()'
+    - R -e 'renv::install("bioc::rhdf5")'
   script:
-    # Install deps or load from renv cache
-    - R -e 'renv::restore()'
     # Build and Check r2ogs6
     - R CMD build . --no-build-vignettes --no-manual
     - R CMD check $(ls -1t *.tar.gz | head -n 1) --no-build-vignettes --no-manual
@@ -28,6 +33,7 @@ test:
     key: "$CI_COMMIT_REF_SLUG"
     untracked: true
     paths:
+      - "$RENV_PATHS_CACHE"
       - "$RENV_PATHS_LIBRARY"
   rules:
     - if: '$CI_PIPELINE_SOURCE == "merge_request_event" || $CI_PIPELINE_SOURCE == "web"'