[bugfix] ci coverage computation

.gitlab-ci.yml

@@ -13,7 +13,8 @@ test:
   variables:
     RETICULATE_MINICONDA_PATH: "/root/.local/share/r-miniconda/"
     RETICULATE_PYTHON_ENV: "/root/.local/share/r-miniconda/envs/r-reticulate/"
-    RENV_CONFIG_EXTERNAL_LIBRARIES: "/usr/local/lib/R/site-library:/usr/local/lib/R/library"
+    #RENV_CONFIG_EXTERNAL_LIBRARIES: "/usr/local/lib/R/site-library:/usr/local/lib/R/library"
+    RENV_CONFIG_EXTERNAL_LIBRARIES: "/usr/local/lib/R/library"
     RENV_PATHS_CACHE: "$CI_PROJECT_DIR/cache"
     RENV_PATHS_LIBRARY: "$CI_PROJECT_DIR/renv/library"
   before_script:
@@ -24,8 +25,8 @@ test:
     - R -e 'renv::install("bioc::rhdf5")'
   script:
     # Build and Check r2ogs6
-    - R CMD build . --no-build-vignettes --no-manual
-    - R CMD check $(ls -1t *.tar.gz | head -n 1) --no-build-vignettes --no-manual
+    #- R CMD build . --no-build-vignettes --no-manual
+    #- R CMD check $(ls -1t *.tar.gz | head -n 1) --no-build-vignettes --no-manual
   after_script:
     - R -e 'covr::package_coverage(type = c("tests", "examples"), quiet = F)'
   coverage: '/Coverage: \d+\.\d+\%/'