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r2ogs6
Commits
c5396b5f
Commit
c5396b5f
authored
1 year ago
by
Johannes Boog
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Merge branch '83-bugfix_coverage_ci' into 'master'
Resolve "[bugfix] coverage computation in ci test pipeline" Closes
#83
See merge request
!61
parents
49cf44ee
fd6c1af1
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1 merge request
!61
Resolve "[bugfix] coverage computation in ci test pipeline"
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.Rbuildignore
+3
-2
3 additions, 2 deletions
.Rbuildignore
.gitlab-ci.yml
+2
-4
2 additions, 4 deletions
.gitlab-ci.yml
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5 additions
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6 deletions
.Rbuildignore
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3
−
2
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c5396b5f
^renv$
^renv\.lock$
^.gitlab-ci.yml
^.*\.Rproj$
^\.Rproj\.user$
^\.Rprofile$
^cache$
^ci$
^config.yml
^data-raw$
...
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@@ -16,4 +15,6 @@
^Meta$
^packrat/
^public$
^renv$
^renv\.lock$
^tmp$
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.gitlab-ci.yml
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4
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c5396b5f
...
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@@ -13,17 +13,15 @@ test:
variables
:
RETICULATE_MINICONDA_PATH
:
"
/root/.local/share/r-miniconda/"
RETICULATE_PYTHON_ENV
:
"
/root/.local/share/r-miniconda/envs/r-reticulate/"
RENV_CONFIG_EXTERNAL_LIBRARIES
:
"
/usr/local/lib/R/
site-library:/usr/local/lib/R/
library"
RENV_CONFIG_EXTERNAL_LIBRARIES
:
"
/usr/local/lib/R/library"
RENV_PATHS_CACHE
:
"
$CI_PROJECT_DIR/cache"
RENV_PATHS_LIBRARY
:
"
$CI_PROJECT_DIR/renv/library"
before_script
:
# Install deps or load from renv
-
R -e "if (!requireNamespace('renv', quietly = TRUE)) install.packages('renv')"
#- R -e 'renv::restore()'
#- R -e 'renv::restore()'
does fail while loading Bioconductor packages
-
R -e 'renv::install()'
-
R -e 'renv::install("bioc::rhdf5")'
script
:
# Build and Check r2ogs6
-
R CMD build . --no-build-vignettes --no-manual
-
R CMD check $(ls -1t *.tar.gz | head -n 1) --no-build-vignettes --no-manual
after_script
:
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