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Commit 17aa0440 authored by Tom Fischer's avatar Tom Fischer
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Merge branch 'DebugOutputIssue' into 'master' 

Fix crash for output of linear order variable on quadratic sub-mesh only

See merge request ogs/ogs!4732
parents c8bf20e3 8fd030d0
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NumLib/DOF/MeshComponentMap.cpp
+ 0
− 3
View file @ 17aa0440
......@@ -24,9 +24,6 @@ namespace NumLib
{
using namespace detail;
GlobalIndexType const MeshComponentMap::nop =
std::numeric_limits<GlobalIndexType>::max();
#ifdef USE_PETSC
MeshComponentMap::MeshComponentMap(
std::vector<MeshLib::MeshSubset> const& components, ComponentOrder order)
......
NumLib/DOF/MeshComponentMap.h
+ 2
− 1
View file @ 17aa0440
......@@ -137,7 +137,8 @@ public:
/// A value returned if no global index was found for the requested
/// location/component. The value is implementation dependent.
static NUMLIB_EXPORT GlobalIndexType const nop;
static constexpr NUMLIB_EXPORT GlobalIndexType const nop =
std::numeric_limits<GlobalIndexType>::max();
#ifndef NDEBUG
const detail::ComponentGlobalIndexDict& getDictionary() const
......
ProcessLib/Output/AddProcessDataToMesh.cpp
+ 8
− 0
View file @ 17aa0440
......@@ -326,6 +326,14 @@ static std::set<std::string> addPrimaryVariablesToMesh(
// per node ordering of components
auto const out_index = node_id * n_components + component_id;
// request for index of linear quantities at higher order nodes
// results in returning NumLib::MeshComponentMap::nop
if (in_index == NumLib::MeshComponentMap::nop)
{
output_data[out_index] = 0;
continue;
}
output_data[out_index] = x_copy[in_index];
}
}
......
Tests/Data/TH2M/HM/empty_variables_flow_fully_saturated_gas_square_1x1_quad8_1e2_bottom_newton_ts_0_t_0.000000.vtu 0 → 100644
+ 48
− 0
View file @ 17aa0440
<?xml version="1.0"?>
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Tests/Data/TH2M/HM/empty_variables_flow_fully_saturated_gas_square_1x1_quad8_1e2_bottom_newton_ts_1_t_1.000000.vtu 0 → 100644
+ 48
− 0
View file @ 17aa0440
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Tests/Data/TH2M/HM/empty_variables_flow_fully_saturated_gas_square_1x1_quad8_1e2_bottom_newton_ts_2_t_2.000000.vtu 0 → 100644
+ 48
− 0
View file @ 17aa0440
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Tests/Data/TH2M/HM/empty_variables_flow_fully_saturated_gas_square_1x1_quad8_1e2_bottom_ts_2_t_2.000000.vtu 0 → 100644
+ 48
− 0
View file @ 17aa0440
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Tests/Data/TH2M/HM/flow_fully_saturated_gas.prj
+ 113
− 33
View file @ 17aa0440
......@@ -228,39 +228,95 @@
</time_stepping>
</process>
</processes>
<output>
<type>VTK</type>
<prefix>flow_fully_saturated_gas</prefix>
<timesteps>
<pair>
<repeat>10000</repeat>
<each_steps>1</each_steps>
</pair>
</timesteps>
<variables>
<variable>gas_pressure</variable>
<variable>gas_pressure_interpolated</variable>
<variable>capillary_pressure</variable>
<variable>capillary_pressure_interpolated</variable>
<variable>temperature</variable>
<variable>temperature_interpolated</variable>
<variable>displacement</variable>
<variable>sigma</variable>
<variable>epsilon</variable>
<variable>velocity_gas</variable>
<variable>velocity_liquid</variable>
<variable>liquid_density</variable>
<variable>gas_density</variable>
<variable>porosity</variable>
<variable>saturation</variable>
<variable>GasMassFlowRate</variable>
<variable>HeatFlowRate</variable>
<variable>LiquidMassFlowRate</variable>
<variable>NodalForces</variable>
<variable>liquid_pressure_interpolated</variable>
</variables>
<suffix>_ts_{:timestep}_t_{:time}</suffix>
</output>
<outputs>
<output>
<type>VTK</type>
<prefix>flow_fully_saturated_gas</prefix>
<suffix>_ts_{:timestep}_t_{:time}</suffix>
<timesteps>
<pair>
<repeat>10000</repeat>
<each_steps>1</each_steps>
</pair>
</timesteps>
<variables>
<variable>gas_pressure</variable>
<variable>gas_pressure_interpolated</variable>
<variable>capillary_pressure</variable>
<variable>capillary_pressure_interpolated</variable>
<variable>temperature</variable>
<variable>temperature_interpolated</variable>
<variable>displacement</variable>
<variable>sigma</variable>
<variable>epsilon</variable>
<variable>velocity_gas</variable>
<variable>velocity_liquid</variable>
<variable>liquid_density</variable>
<variable>gas_density</variable>
<variable>porosity</variable>
<variable>saturation</variable>
<variable>GasMassFlowRate</variable>
<variable>HeatFlowRate</variable>
<variable>LiquidMassFlowRate</variable>
<variable>NodalForces</variable>
<variable>liquid_pressure_interpolated</variable>
</variables>
</output>
<!-- test output configuration with sub-domain mesh and output of linear primary variables -->
<output>
<type>VTK</type>
<prefix>flow_fully_saturated_gas_{:meshname}</prefix>
<timesteps>
<pair>
<repeat>10000</repeat>
<each_steps>1</each_steps>
</pair>
</timesteps>
<meshes>
<mesh>square_1x1_quad8_1e2_bottom</mesh>
</meshes>
<variables>
<variable>gas_pressure</variable>
<variable>gas_pressure_interpolated</variable>
<variable>capillary_pressure</variable>
<variable>capillary_pressure_interpolated</variable>
<variable>temperature</variable>
<variable>temperature_interpolated</variable>
<variable>displacement</variable>
<variable>sigma</variable>
<variable>epsilon</variable>
<variable>velocity_gas</variable>
<variable>velocity_liquid</variable>
<variable>liquid_density</variable>
<variable>gas_density</variable>
<variable>porosity</variable>
<variable>saturation</variable>
<variable>GasMassFlowRate</variable>
<variable>HeatFlowRate</variable>
<variable>LiquidMassFlowRate</variable>
<variable>NodalForces</variable>
<variable>liquid_pressure_interpolated</variable>
</variables>
<suffix>_ts_{:timestep}_t_{:time}</suffix>
</output>
<!-- test output configuration with sub-domain mesh and empty variables section -->
<output>
<type>VTK</type>
<prefix>empty_variables_flow_fully_saturated_gas_{:meshname}</prefix>
<suffix>_ts_{:timestep}_t_{:time}</suffix>
<timesteps>
<pair>
<repeat>10000</repeat>
<each_steps>1</each_steps>
</pair>
</timesteps>
<meshes>
<mesh>square_1x1_quad8_1e2_bottom</mesh>
</meshes>
<variables>
</variables>
</output>
</outputs>
</time_loop>
<parameters>
<!-- Mechanics -->
......@@ -502,5 +558,29 @@
<absolute_tolerance>1e-15</absolute_tolerance>
<relative_tolerance>0</relative_tolerance>
</vtkdiff>
<vtkdiff>
<regex>flow_fully_saturated_gas_square_1x1_quad8_1e2_bottom_ts_.*.vtu</regex>
<field>gas_pressure</field>
<absolute_tolerance>2e-15</absolute_tolerance>
<relative_tolerance>2e-15</relative_tolerance>
</vtkdiff>
<vtkdiff>
<regex>flow_fully_saturated_gas_square_1x1_quad8_1e2_bottom_ts_.*.vtu</regex>
<field>capillary_pressure</field>
<absolute_tolerance>2e-15</absolute_tolerance>
<relative_tolerance>1e-15</relative_tolerance>
</vtkdiff>
<vtkdiff>
<regex>empty_variables_flow_fully_saturated_gas_square_1x1_quad8_1e2_bottom_ts_.*.vtu</regex>
<field>gas_pressure</field>
<absolute_tolerance>2e-15</absolute_tolerance>
<relative_tolerance>2e-15</relative_tolerance>
</vtkdiff>
<vtkdiff>
<regex>empty_variables_flow_fully_saturated_gas_square_1x1_quad8_1e2_bottom_ts_.*.vtu</regex>
<field>capillary_pressure</field>
<absolute_tolerance>2e-15</absolute_tolerance>
<relative_tolerance>1e-15</relative_tolerance>
</vtkdiff>
</test_definition>
</OpenGeoSysProject>
Tests/Data/TH2M/HM/flow_fully_saturated_gas_newton.xml
+ 9
− 1
View file @ 17aa0440
<?xml version="1.0" encoding="ISO-8859-1"?>
<OpenGeoSysProjectDiff base_file="flow_fully_saturated_gas.prj">
<remove msel="/*/*/process/jacobian_assembler"/>
<replace sel="/*/time_loop/output/prefix/text()">flow_fully_saturated_gas_newton</replace>
<replace msel="/*/time_loop/outputs/output[1]/prefix/text()">flow_fully_saturated_gas_newton</replace>
<replace msel="/*/time_loop/outputs/output[2]/prefix/text()">flow_fully_saturated_gas_{:meshname}_newton</replace>
<replace msel="/*/time_loop/outputs/output[3]/prefix/text()">empty_variables_flow_fully_saturated_gas_{:meshname}_newton</replace>
<replace msel="/*/test_definition/vtkdiff/regex/text()">flow_fully_saturated_gas_newton_ts_.*.vtu</replace>
<replace msel="/*/test_definition/vtkdiff[last()-3]/regex/text()">flow_fully_saturated_gas_square_1x1_quad8_1e2_bottom_newton_ts_.*.vtu</replace>
<replace msel="/*/test_definition/vtkdiff[last()-2]/regex/text()">flow_fully_saturated_gas_square_1x1_quad8_1e2_bottom_newton_ts_.*.vtu</replace>
<replace msel="/*/test_definition/vtkdiff[last()-1]/regex/text()">empty_variables_flow_fully_saturated_gas_square_1x1_quad8_1e2_bottom_newton_ts_.*.vtu</replace>
<replace msel="/*/test_definition/vtkdiff[last()]/regex/text()">empty_variables_flow_fully_saturated_gas_square_1x1_quad8_1e2_bottom_newton_ts_.*.vtu</replace>
</OpenGeoSysProjectDiff>
Tests/Data/TH2M/HM/flow_fully_saturated_gas_square_1x1_quad8_1e2_bottom_newton_ts_0_t_0.000000.vtu 0 → 100644
+ 45
− 0
View file @ 17aa0440
<?xml version="1.0"?>
<VTKFile type="UnstructuredGrid" version="1.0" byte_order="LittleEndian" header_type="UInt64" compressor="vtkZLibDataCompressor">
<UnstructuredGrid>
<FieldData>
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</FieldData>
<Piece NumberOfPoints="21" NumberOfCells="10" >
<PointData>
<DataArray type="Float64" Name="GasMassFlowRate" format="appended" RangeMin="0" RangeMax="0" offset="92" />
<DataArray type="Float64" Name="HeatFlowRate" format="appended" RangeMin="0" RangeMax="0" offset="152" />
<DataArray type="Float64" Name="LiquidMassFlowRate" format="appended" RangeMin="0" RangeMax="0" offset="212" />
<DataArray type="Float64" Name="NodalForces" NumberOfComponents="2" format="appended" RangeMin="0" RangeMax="0" offset="272" />
<DataArray type="Float64" Name="capillary_pressure" format="appended" RangeMin="0" RangeMax="0" offset="336" />
<DataArray type="Float64" Name="capillary_pressure_interpolated" format="appended" RangeMin="0" RangeMax="0" offset="396" />
<DataArray type="Float64" Name="displacement" NumberOfComponents="2" format="appended" RangeMin="0" RangeMax="0" offset="456" />
<DataArray type="Float64" Name="epsilon" NumberOfComponents="4" format="appended" RangeMin="0" RangeMax="0" offset="520" />
<DataArray type="Float64" Name="gas_density" format="appended" RangeMin="1" RangeMax="1" offset="584" />
<DataArray type="Float64" Name="gas_pressure" format="appended" RangeMin="0" RangeMax="0" offset="676" />
<DataArray type="Float64" Name="gas_pressure_interpolated" format="appended" RangeMin="0" RangeMax="0" offset="736" />
<DataArray type="Float64" Name="liquid_density" format="appended" RangeMin="1" RangeMax="1" offset="796" />
<DataArray type="Float64" Name="liquid_pressure_interpolated" format="appended" RangeMin="0" RangeMax="0" offset="888" />
<DataArray type="Float64" Name="porosity" format="appended" RangeMin="0.1" RangeMax="0.1" offset="948" />
<DataArray type="Float64" Name="saturation" format="appended" RangeMin="0" RangeMax="0" offset="1040" />
<DataArray type="Float64" Name="sigma" NumberOfComponents="4" format="appended" RangeMin="0" RangeMax="0" offset="1100" />
<DataArray type="Float64" Name="temperature" format="appended" RangeMin="0" RangeMax="298.15" offset="1164" />
<DataArray type="Float64" Name="temperature_interpolated" format="appended" RangeMin="298.15" RangeMax="298.15" offset="1252" />
<DataArray type="Float64" Name="velocity_gas" NumberOfComponents="2" format="appended" RangeMin="0" RangeMax="0" offset="1320" />
<DataArray type="Float64" Name="velocity_liquid" NumberOfComponents="2" format="appended" RangeMin="0" RangeMax="0" offset="1384" />
</PointData>
<CellData>
</CellData>
<Points>
<DataArray type="Float64" Name="Points" NumberOfComponents="3" format="appended" RangeMin="0" RangeMax="1" offset="1448" />
</Points>
<Cells>
<DataArray type="Int64" Name="connectivity" format="appended" RangeMin="" RangeMax="" offset="1628" />
<DataArray type="Int64" Name="offsets" format="appended" RangeMin="" RangeMax="" offset="1752" />
<DataArray type="UInt8" Name="types" format="appended" RangeMin="" RangeMax="" offset="1844" />
</Cells>
</Piece>
</UnstructuredGrid>
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Tests/Data/TH2M/HM/flow_fully_saturated_gas_square_1x1_quad8_1e2_bottom_newton_ts_1_t_1.000000.vtu 0 → 100644
+ 45
− 0
View file @ 17aa0440
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Tests/Data/TH2M/HM/flow_fully_saturated_gas_square_1x1_quad8_1e2_bottom_newton_ts_2_t_2.000000.vtu 0 → 100644
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View file @ 17aa0440
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Tests/Data/TH2M/HM/flow_fully_saturated_gas_square_1x1_quad8_1e2_bottom_ts_0_t_0.000000.vtu 0 → 100644
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Tests/Data/TH2M/HM/flow_fully_saturated_gas_square_1x1_quad8_1e2_bottom_ts_2_t_2.000000.vtu 0 → 100644
+ 48
− 0
View file @ 17aa0440
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