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Commit 93f12dc7 authored by Dmitri Naumov's avatar Dmitri Naumov
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Merge branch 'FixPETScMeshComponenteMapBug' into 'master' 

Bug fix for DOF index calculation in parallel ogs version

See merge request ogs/ogs!4738
parents a6c00c5f b5dcba54
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NumLib/DOF/MeshComponentMap.cpp
+ 7
− 0
View file @ 93f12dc7
......@@ -250,6 +250,13 @@ GlobalIndexType MeshComponentMap::getLocalIndex(
std::size_t const range_end) const
{
GlobalIndexType const global_index = getGlobalIndex(l, comp_id);
// request for index of linear quantities at higher order nodes
// results in returning nop
// That index shall not be modified like a usual global index.
if (global_index == nop)
{
return nop;
}
#ifndef USE_PETSC
(void)range_begin;
(void)range_end;
......
ProcessLib/Assembly/MatrixElementCache.h
+ 0
− 1
View file @ 93f12dc7
......@@ -91,7 +91,6 @@ public:
{
auto const [r, c] = rc;
assert(r >= 0); // rows must not be ghost indices
auto const c_no_ghost =
detail::transformToNonGhostIndex(c, n_cols);
......
Tests/Data/ThermoRichardsMechanics/LinearMechanics/mechanics_linear.prj
+ 54
− 37
View file @ 93f12dc7
......@@ -6,8 +6,12 @@
pressure being one lower then the order of displacement.
-->
<OpenGeoSysProject>
<mesh>square_1x1_quad8_1e2.vtu</mesh>
<geometry>square_1x1.gml</geometry>
<meshes>
<mesh>square_1x1_quad8_1e2.vtu</mesh>
<mesh>square_1x1_geometry_bottom.vtu</mesh>
<mesh>square_1x1_geometry_left.vtu</mesh>
<mesh>square_1x1_geometry_top.vtu</mesh>
</meshes>
<processes>
<process>
<name>RM</name>
......@@ -167,27 +171,45 @@
</time_stepping>
</process>
</processes>
<output>
<type>VTK</type>
<prefix>mechanics_linear</prefix>
<timesteps>
<pair>
<repeat>1</repeat>
<each_steps>10000000</each_steps>
</pair>
</timesteps>
<variables>
<variable>temperature</variable>
<variable>displacement</variable>
<variable>pressure</variable>
<variable>sigma</variable>
<variable>epsilon</variable>
<variable>velocity</variable>
<variable>saturation</variable>
<variable>NodalForces</variable>
</variables>
<suffix>_ts_{:timestep}_t_{:time}</suffix>
</output>
<outputs>
<output>
<type>VTK</type>
<prefix>mechanics_linear</prefix>
<timesteps>
<pair>
<repeat>1</repeat>
<each_steps>10000000</each_steps>
</pair>
</timesteps>
<variables>
<variable>temperature</variable>
<variable>displacement</variable>
<variable>pressure</variable>
<variable>sigma</variable>
<variable>epsilon</variable>
<variable>velocity</variable>
<variable>saturation</variable>
<variable>NodalForces</variable>
</variables>
<suffix>_ts_{:timestep}_t_{:time}</suffix>
</output>
<output>
<type>VTK</type>
<prefix>mechanics_linear_{:meshname}</prefix>
<meshes>
<mesh>square_1x1_geometry_left</mesh>
</meshes>
<timesteps>
<pair>
<repeat>1</repeat>
<each_steps>10000000</each_steps>
</pair>
</timesteps>
<variables>
</variables>
<suffix>_ts_{:timestep}_t_{:time}</suffix>
</output>
</outputs>
</time_loop>
<parameters>
<!-- Mechanics -->
......@@ -246,8 +268,7 @@
<initial_condition>T_ref</initial_condition>
<boundary_conditions>
<boundary_condition>
<geometrical_set>square_1x1_geometry</geometrical_set>
<geometry>top</geometry>
<mesh>square_1x1_geometry_top</mesh>
<type>Dirichlet</type>
<parameter>T_ref</parameter>
</boundary_condition>
......@@ -260,8 +281,7 @@
<initial_condition>pressure_ic</initial_condition>
<boundary_conditions>
<boundary_condition>
<geometrical_set>square_1x1_geometry</geometrical_set>
<geometry>top</geometry>
<mesh>square_1x1_geometry_top</mesh>
<type>Dirichlet</type>
<component>0</component>
<parameter>dirichlet_p</parameter>
......@@ -275,22 +295,19 @@
<initial_condition>displacement0</initial_condition>
<boundary_conditions>
<boundary_condition>
<geometrical_set>square_1x1_geometry</geometrical_set>
<geometry>left</geometry>
<mesh>square_1x1_geometry_left</mesh>
<type>Dirichlet</type>
<component>0</component>
<parameter>dirichlet0</parameter>
</boundary_condition>
<boundary_condition>
<geometrical_set>square_1x1_geometry</geometrical_set>
<geometry>bottom</geometry>
<mesh>square_1x1_geometry_bottom</mesh>
<type>Dirichlet</type>
<component>1</component>
<parameter>dirichlet0</parameter>
</boundary_condition>
<boundary_condition>
<geometrical_set>square_1x1_geometry</geometrical_set>
<geometry>top</geometry>
<mesh>square_1x1_geometry_top</mesh>
<type>Dirichlet</type>
<component>1</component>
<parameter>dirichlet1</parameter>
......@@ -320,25 +337,25 @@
</linear_solvers>
<test_definition>
<vtkdiff>
<regex>mechanics_linear_ts_.*.vtu</regex>
<regex>mechanics_linear.*_ts_.*.vtu</regex>
<field>displacement</field>
<absolute_tolerance>1e-15</absolute_tolerance>
<relative_tolerance>0</relative_tolerance>
</vtkdiff>
<vtkdiff>
<regex>mechanics_linear_ts_.*.vtu</regex>
<regex>mechanics_linear.*_ts_.*.vtu</regex>
<field>sigma</field>
<absolute_tolerance>5e-15</absolute_tolerance>
<relative_tolerance>0</relative_tolerance>
</vtkdiff>
<vtkdiff>
<regex>mechanics_linear_ts_.*.vtu</regex>
<regex>mechanics_linear.*_ts_.*.vtu</regex>
<field>epsilon</field>
<absolute_tolerance>5e-15</absolute_tolerance>
<relative_tolerance>0</relative_tolerance>
</vtkdiff>
<vtkdiff>
<regex>mechanics_linear_ts_.*.vtu</regex>
<regex>mechanics_linear.*_ts_.*.vtu</regex>
<field>NodalForces</field>
<absolute_tolerance>1e-15</absolute_tolerance>
<relative_tolerance>0</relative_tolerance>
......
Tests/Data/ThermoRichardsMechanics/LinearMechanics/mechanics_linear_square_1x1_geometry_left_ts_4_t_1.000000.vtu 0 → 100644
+ 44
− 0
View file @ 93f12dc7
<?xml version="1.0"?>
<VTKFile type="UnstructuredGrid" version="1.0" byte_order="LittleEndian" header_type="UInt64" compressor="vtkZLibDataCompressor">
<UnstructuredGrid>
<FieldData>
<DataArray type="Int8" Name="OGS_VERSION" NumberOfTuples="18" format="appended" RangeMin="45" RangeMax="103" offset="0" />
</FieldData>
<Piece NumberOfPoints="21" NumberOfCells="10" >
<PointData>
<DataArray type="Float64" Name="HeatFlowRate" format="appended" RangeMin="-5.6843418861e-14" RangeMax="5.6843418861e-14" offset="80" />
<DataArray type="Float64" Name="MassFlowRate" format="appended" RangeMin="-6.5786495107e-25" RangeMax="1.7625987737e-24" offset="172" />
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<DataArray type="Float64" Name="displacement" NumberOfComponents="2" format="appended" RangeMin="0" RangeMax="0.05" offset="884" />
<DataArray type="Float64" Name="epsilon" NumberOfComponents="4" format="appended" RangeMin="0.054398379328" RangeMax="0.054398379328" offset="1120" />
<DataArray type="Float64" Name="pressure" format="appended" RangeMin="-4.0142305602e-08" RangeMax="0" offset="1568" />
<DataArray type="Float64" Name="pressure_interpolated" format="appended" RangeMin="-4.0142305602e-08" RangeMax="0" offset="1740" />
<DataArray type="Float64" Name="saturation" format="appended" RangeMin="1" RangeMax="1" offset="2016" />
<DataArray type="Float64" Name="sigma" NumberOfComponents="4" format="appended" RangeMin="0.057364321478" RangeMax="0.057364321478" offset="2100" />
<DataArray type="Float64" Name="temperature" format="appended" RangeMin="0" RangeMax="293.15" offset="2784" />
<DataArray type="Float64" Name="temperature_interpolated" format="appended" RangeMin="293.15" RangeMax="293.15" offset="2876" />
<DataArray type="Float64" Name="velocity" NumberOfComponents="2" format="appended" RangeMin="6.348975563e-19" RangeMax="1.9261175085e-17" offset="2976" />
</PointData>
<CellData>
<DataArray type="UInt64" Name="bulk_element_ids" format="appended" RangeMin="0" RangeMax="90" offset="3484" />
<DataArray type="Float64" Name="liquid_density_avg" format="appended" RangeMin="1e-06" RangeMax="1e-06" offset="3576" />
<DataArray type="Float64" Name="porosity_avg" format="appended" RangeMin="0.1" RangeMax="0.1" offset="3648" />
<DataArray type="Float64" Name="saturation_avg" format="appended" RangeMin="1" RangeMax="1" offset="3716" />
<DataArray type="Float64" Name="stress_avg" NumberOfComponents="4" format="appended" RangeMin="0.057364321478" RangeMax="0.057364321478" offset="3784" />
<DataArray type="Float64" Name="viscosity_avg" format="appended" RangeMin="1e-10" RangeMax="1e-10" offset="4128" />
</CellData>
<Points>
<DataArray type="Float64" Name="Points" NumberOfComponents="3" format="appended" RangeMin="0" RangeMax="1" offset="4200" />
</Points>
<Cells>
<DataArray type="Int64" Name="connectivity" format="appended" RangeMin="" RangeMax="" offset="4380" />
<DataArray type="Int64" Name="offsets" format="appended" RangeMin="" RangeMax="" offset="4504" />
<DataArray type="UInt8" Name="types" format="appended" RangeMin="" RangeMax="" offset="4596" />
</Cells>
</Piece>
</UnstructuredGrid>
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Tests/Data/ThermoRichardsMechanics/LinearMechanics/square_1x1_geometry_bottom.vtu 0 → 100644
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View file @ 93f12dc7
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Tests/Data/ThermoRichardsMechanics/LinearMechanics/square_1x1_geometry_left.vtu 0 → 100644
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Tests/Data/ThermoRichardsMechanics/LinearMechanics/square_1x1_geometry_top.vtu 0 → 100644
+ 24
− 0
View file @ 93f12dc7
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