Binding to core 0 is default behaviour of mpirun(1):

Please note that mpirun automatically binds processes as of the start of the v1.8 series. Three binding patterns are used in the absence of any further directives:

Bind to core: when the number of processes is <= 2
Bind to socket: when the number of processes is > 2
Bind to none: when oversubscribed

Removed hard-coded build-time venv.

This can happen if you have the ogs-wheel installed but are running a local ogs binary. In this case use `import OpenGeoSys` or uninstall the wheel.

Allows co-existance with ogstools python package in build dir virtual environment.

Requires to uninstall ogs wheel in venv and to set the PYTHONPATH (both handled by CMake and .envrc-file used by the direnv-tool).

CLI flags without additional value can now be given with e.g.:

cli.GMSH2OGS(gmsh2_physical_id=True) # or gmsh2_physical_id=None

cli.GMSH2OGS(gmsh2_physical_id=False) # disables the flag.

- pytest is added to requirements-dev.txt
- 'pytest' ctest is added

[T] Disable pytest on sanitizer build.

Tests have to write to different output files when running concurrently.

- with option --copy-material_ids instead of --set-material-id
- without options --copy-material_ids and --set-material-id
- failing test where contradicting options are set

Should fix pytest issue.

Remove unused boost/... headers.

This tool parses vtkfdiff output from OGS log files and outputs a summary
of error norms in a format that can be copy-pasted into the
<test_definition> section of the prj file.

The Simulation instance needs to be alive upon Python exception
handling, otherwise e.what() will lead to a segfault.
Why? → Because Simulation "owns" the Python interpreter.

Could not get it to work. Fails when calling GMSH2OGS binary. Has almost
the same structure as notebook-inclined_bhe_meshing.md which runs fine.

Follow-up on !4989 and !4996.

When a mesh directory is given with the -m switch, the gml file is also
read from the given mesh directory. This commit adds a fallback to also
reading from the prj-file directory.

Motivation is when using partitioned meshes they often are created in
subdirectories of the project. Before this one had to copy the gml file
into that location too.

Prints a warning on error, e.g.:

warning: Could not create output directory _out. Error code 17, File exists

Lars Bilke authored 10 months ago and Tom Fischer committed 10 months ago

Prints a warning on error, e.g.:

warning: Could not create output directory _out. Error code 17, File exists