CreateComponentTransportProcess.cpp

/**
 * \copyright
 * Copyright (c) 2012-2019, OpenGeoSys Community (http://www.opengeosys.org)
 *            Distributed under a Modified BSD License.
 *              See accompanying file LICENSE.txt or
 *              http://www.opengeosys.org/project/license
 *
 */

#include "CreateComponentTransportProcess.h"

#include "MaterialLib/Fluid/FluidProperties/CreateFluidProperties.h"
#include "MaterialLib/MPL/CreateMaterialSpatialDistributionMap.h"
#include "MaterialLib/PorousMedium/CreatePorousMediaProperties.h"
#include "MeshLib/IO/readMeshFromFile.h"
#include "ParameterLib/ConstantParameter.h"
#include "ParameterLib/Utils.h"
#include "ProcessLib/Output/CreateSecondaryVariables.h"
#include "ProcessLib/SurfaceFlux/SurfaceFluxData.h"
#include "ProcessLib/Utils/ProcessUtils.h"

#include "ComponentTransportProcess.h"
#include "ComponentTransportProcessData.h"
namespace ProcessLib
{
namespace ComponentTransport
{
std::unique_ptr<Process> createComponentTransportProcess(
    MeshLib::Mesh& mesh,
    std::unique_ptr<ProcessLib::AbstractJacobianAssembler>&& jacobian_assembler,
    std::vector<ProcessVariable> const& variables,
    std::vector<std::unique_ptr<ParameterLib::ParameterBase>> const& parameters,
    unsigned const integration_order,
    BaseLib::ConfigTree const& config,
    std::vector<std::unique_ptr<MeshLib::Mesh>> const& meshes,
    std::string const& output_directory,
    std::map<int, std::unique_ptr<MaterialPropertyLib::Medium>> const& media)
{
    //! \ogs_file_param{prj__processes__process__type}
    config.checkConfigParameter("type", "ComponentTransport");

    DBUG("Create ComponentTransportProcess.");
    auto const staggered_scheme =
        //! \ogs_file_param{prj__processes__process__ComponentTransport__coupling_scheme}
        config.getConfigParameterOptional<std::string>("coupling_scheme");
    const bool use_monolithic_scheme =
        !(staggered_scheme && (*staggered_scheme == "staggered"));

    // Process variable.

    //! \ogs_file_param{prj__processes__process__ComponentTransport__process_variables}
    auto const pv_config = config.getConfigSubtree("process_variables");

    std::vector<std::vector<std::reference_wrapper<ProcessVariable>>>
        process_variables;

    // Collect all process variables in a vector before allocation
    // pressure first, concentration then
    auto const collected_process_variables = findProcessVariables(
        variables, pv_config,
        {//! \ogs_file_param_special{prj__processes__process__ComponentTransport__process_variables__pressure}
         "pressure",
         //! \ogs_file_param_special{prj__processes__process__ComponentTransport__process_variables__concentration}
         "concentration"});

    // Check number of components for each process variable
    auto it = std::find_if(
        collected_process_variables.cbegin(),
        collected_process_variables.cend(),
        [](std::reference_wrapper<ProcessLib::ProcessVariable> const& pv) {