ProcessVariable.cpp

/**
 * \copyright
 * Copyright (c) 2012-2018, OpenGeoSys Community (http://www.opengeosys.org)
 *            Distributed under a Modified BSD License.
 *              See accompanying file LICENSE.txt or
 *              http://www.opengeosys.org/project/license
 *
 */

#include "ProcessVariable.h"

#include <utility>
#include <logog/include/logog.hpp>

#include "BaseLib/Algorithm.h"
#include "MeshGeoToolsLib/ConstructMeshesFromGeometries.h"
#include "MeshLib/Mesh.h"
#include "ProcessLib/BoundaryCondition/BoundaryCondition.h"
#include "ProcessLib/BoundaryCondition/CreateBoundaryCondition.h"
#include "ProcessLib/SourceTerms/CreateSourceTerm.h"
#include "ProcessLib/SourceTerms/NodalSourceTerm.h"
#include "ProcessLib/Utils/ProcessUtils.h"

namespace
{
MeshLib::Mesh const& findMeshInConfig(
    BaseLib::ConfigTree const& config,
    std::vector<std::unique_ptr<MeshLib::Mesh>> const& meshes)
{
    //
    // Get the mesh name from the config.
    //
    std::string mesh_name;  // Either given directly in <mesh> or constructed
                            // from <geometrical_set>_<geometry>.

#ifdef DOXYGEN_DOCU_ONLY
    //! \ogs_file_param{prj__process_variables__process_variable__source_terms__source_term__mesh}
    config.getConfigParameterOptional<std::string>("mesh");
#endif  // DOXYGEN_DOCU_ONLY

    auto optional_mesh_name =
        //! \ogs_file_param{prj__process_variables__process_variable__boundary_conditions__boundary_condition__mesh}
        config.getConfigParameterOptional<std::string>("mesh");
    if (optional_mesh_name)
    {
        mesh_name = *optional_mesh_name;
    }
    else
    {
        // Looking for the mesh created before for the given geometry.

#ifdef DOXYGEN_DOCU_ONLY
        //! \ogs_file_param{prj__process_variables__process_variable__source_terms__source_term__geometrical_set}
        config.getConfigParameterOptional<std::string>("geometrical_set");
        //! \ogs_file_param{prj__process_variables__process_variable__source_terms__source_term__geometry}
        config.getConfigParameter<std::string>("geometry");
#endif  // DOXYGEN_DOCU_ONLY

        auto const geometrical_set_name =
            //! \ogs_file_param{prj__process_variables__process_variable__boundary_conditions__boundary_condition__geometrical_set}
            config.getConfigParameter<std::string>("geometrical_set");
        auto const geometry_name =
            //! \ogs_file_param{prj__process_variables__process_variable__boundary_conditions__boundary_condition__geometry}
            config.getConfigParameter<std::string>("geometry");

        mesh_name = MeshGeoToolsLib::meshNameFromGeometry(geometrical_set_name,
                                                          geometry_name);
    }

    //
    // Find and extract mesh from the list of meshes.
    //
    auto const& mesh = *BaseLib::findElementOrError(
        begin(meshes), end(meshes),
        [&mesh_name](auto const& mesh) {
            assert(mesh != nullptr);
            return mesh->getName() == mesh_name;
        },
        "Required mesh with name '" + mesh_name + "' not found.");
    DBUG("Found mesh '%s' with id %d.", mesh.getName().c_str(), mesh.getID());

    return mesh;
}
}  // namespace

namespace ProcessLib
{
ProcessVariable::ProcessVariable(
    BaseLib::ConfigTree const& config,
    MeshLib::Mesh& mesh,
    std::vector<std::unique_ptr<MeshLib::Mesh>> const& meshes,
    std::vector<std::unique_ptr<ParameterBase>> const& parameters)
    :  //! \ogs_file_param{prj__process_variables__process_variable__name}
      _name(config.getConfigParameter<std::string>("name")),
      _mesh(mesh),
      //! \ogs_file_param{prj__process_variables__process_variable__components}
      _n_components(config.getConfigParameter<int>("components")),
      //! \ogs_file_param{prj__process_variables__process_variable__order}
      _shapefunction_order(config.getConfigParameter<unsigned>("order")),
      _initial_condition(findParameter<double>(
          //! \ogs_file_param{prj__process_variables__process_variable__initial_condition}
          config.getConfigParameter<std::string>("initial_condition"),
          parameters, _n_components))
{
    DBUG("Constructing process variable %s", _name.c_str());

    if (_shapefunction_order < 1 || 2 < _shapefunction_order)
        OGS_FATAL("The given shape function order %d is not supported", _shapefunction_order);

    // Boundary conditions
    //! \ogs_file_param{prj__process_variables__process_variable__boundary_conditions}
    if (auto bcs_config = config.getConfigSubtreeOptional("boundary_conditions"))
    {
        for (auto bc_config :
             //! \ogs_file_param{prj__process_variables__process_variable__boundary_conditions__boundary_condition}
             bcs_config->getConfigSubtreeList("boundary_condition"))
        {
            auto const& mesh = findMeshInConfig(bc_config, meshes);
            auto component_id =
                //! \ogs_file_param{prj__process_variables__process_variable__boundary_conditions__boundary_condition__component}
                bc_config.getConfigParameterOptional<int>("component");

            if (!component_id && _n_components == 1)
                // default value for single component vars.
                component_id = 0;

            _bc_configs.emplace_back(std::move(bc_config), mesh, component_id);
        }
    } else {
        INFO("No boundary conditions found.");
    }

    // Source terms
    //! \ogs_file_param{prj__process_variables__process_variable__source_terms}
    if (auto sts_config = config.getConfigSubtreeOptional("source_terms"))
    {
        for (auto st_config :
             //! \ogs_file_param{prj__process_variables__process_variable__source_terms__source_term}
             sts_config->getConfigSubtreeList("source_term"))
        {
            MeshLib::Mesh const& mesh = findMeshInConfig(st_config, meshes);
            auto component_id =
                //! \ogs_file_param{prj__process_variables__process_variable__source_terms__source_term__component}
                st_config.getConfigParameterOptional<int>("component");

            if (!component_id && _n_components == 1)
                // default value for single component vars.
                component_id = 0;

            _source_term_configs.emplace_back(std::move(st_config), mesh,
                                              component_id);
        }
    } else {
        INFO("No source terms found.");
    }
}

ProcessVariable::ProcessVariable(ProcessVariable&& other)
    : _name(std::move(other._name)),
      _mesh(other._mesh),
      _n_components(other._n_components),
      _shapefunction_order(other._shapefunction_order),
      _initial_condition(std::move(other._initial_condition)),
      _bc_configs(std::move(other._bc_configs)),
      _source_term_configs(std::move(other._source_term_configs))
{
}

std::string const& ProcessVariable::getName() const
{
    return _name;
}

MeshLib::Mesh const& ProcessVariable::getMesh() const
{
    return _mesh;
}

MeshLib::PropertyVector<double>& ProcessVariable::getOrCreateMeshProperty()
{
    return *MeshLib::getOrCreateMeshProperty<double>(
        _mesh, _name, MeshLib::MeshItemType::Node, _n_components);
}

std::vector<std::unique_ptr<BoundaryCondition>>
ProcessVariable::createBoundaryConditions(
    const NumLib::LocalToGlobalIndexMap& dof_table,
    const int variable_id,
    unsigned const integration_order,
    std::vector<std::unique_ptr<ParameterBase>> const& parameters,
    Process const& process)
{
    std::vector<std::unique_ptr<BoundaryCondition>> bcs;
    bcs.reserve(_bc_configs.size());

    for (auto& config : _bc_configs)
    {
        auto bc = createBoundaryCondition(config, dof_table, _mesh, variable_id,
                                          integration_order,
                                          _shapefunction_order, parameters,
                                          process);
#ifdef USE_PETSC
        if (bc == nullptr)
        {
            continue;
        }
#endif  // USE_PETSC
        bcs.push_back(std::move(bc));
    }

    return bcs;
}

std::vector<std::unique_ptr<NodalSourceTerm>>
ProcessVariable::createSourceTerms(
    const NumLib::LocalToGlobalIndexMap& dof_table,
    const int variable_id,
    unsigned const integration_order,
    std::vector<std::unique_ptr<ParameterBase>> const& parameters)
{
    std::vector<std::unique_ptr<NodalSourceTerm>> source_terms;

    for (auto& config : _source_term_configs)
        source_terms.emplace_back(createSourceTerm(
            config, dof_table, _mesh, variable_id, integration_order,
            _shapefunction_order, parameters));

    return source_terms;
}

}  // namespace ProcessLib