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Commit 38cf101f authored by Dmitri Naumov's avatar Dmitri Naumov
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Update changelog for 6.2.0 release.

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# 6.2.0
## Features
### New processes
- HeatTransportBHE process supporting 1U, CXA, and CXC BHE types. #2221, #2332,
#2271, #2275
- Staggered implementation of a thermo-mechanical with phasefield process. #2102
- Richards mechanics process. #2189
- Small deformation process with non-local integration of damage. #2294
- Staggered implementation of phasefield process. #2052
- ComponentTransport process in revised formulation. #2200
- Multi-component transport process. #2304
### Other process' changes
- A Jacobian tester: a process's Jacobian assembly can be compared to a
numerical Jacobian (mostly for development. #2238
- Add `setInitialConditions()` call to processes and local assemblers. #2334
- Several bug fixes for LIE/HM process including "fracture into matrix
leak-off", Darcy velocity output in the fracture. #2129
- Support for intersecting fractures (x-crossing and t-junction) in LIE/SD
process. #2235, #2293
- Fixed the calculation of the Darcy velocity in staggered TH. #2127
#### Numerics
- Staggered scheme for coupled processes with different orders of elements.
#2016
- Subdomain deactivation within time intervals. #2297
- Add a driver for an iteration based time stepping algorithm. #2318
#### Boundary condition
- Implementation of Python boundary conditions. #2170
- Implementation of constraint boundary conditions. #2145
- Dirichlet boundary condition within a time interval. #2272
- BoundaryElementSearch: Return bulk element id and bulk element face id. #2125
- Removed Neumann boundary condition for displacement jumps in LIE processes.
#2153
#### Source term
- Use parameter for source terms. #2061
- Volumetric source terms implementation. #2220, #2234, #2241, #2261
#### Input and output
- Writing and reading of integration point data. Implemented sigma and epsilon
output for some processes. #2071, #2203, #2324
- Add input of vtu-meshes for boundary conditions additionally to the gml input.
This is later used by the heterogeneous parameters and source terms. #2140,
#2141, #2156
- Parameters may now be explicitly defined on arbitrary subdomains. This merges
the Heterogeneous Dirichlet and Neumann boundary conditions with their,
previously only homogeneous, counterparts. #2376
- Parameters now support space-dependent function input via exprtk library.
#2325, #2339
- Output of primary variables on arbitrary subdomains. #2372, #2299
- Output is possible at specific times for adaptive time stepping and
evolutionaryPIDController. #2079
- Calculate and output specific flux. #2411
- Enable surface flux calculation for component transport process. #2168
- Interpolated pressure (on higher order elements' nodes) output for
Richards-mechanics and hydro-mechanics processes. #2228
- Improve output of nodal aperture and aperture vector in LIE/HM. #2050
- Add output of nodal forces and hydraulic flow in mechanics and coupled
mechanics processes, SD, HM, LIE/SD, LIE/HM. #2118
- Enable surface flux calculation for HT process. #2132
- Fixed pvd output. #2036
### Material model changes
- BGRa creep model. #2167
- New cohesive zone mode I fracture model for LIE processes. #2142, #2157
- Add MFront/TFEL solid constitutive relation support via.
MFrontGenericInterfaceSupport library. CMake option `OGS_USE_MFRONT`. #2259
- Infrastructure for multi-phase, multi-component material properties library.
#2303
- Anisotropic tensors may now be given in given local coordinate system. #2370
- Non-constant density model implementation in HC process. #2200
- Add second derivatives of permeability functions in Richards flow. #2188
- Different solid material models can now be defined on different materialIDs.
#2216, #2262, #2270
- Move solid constitutive relation creation in single place. #2160
### Testing and documentation
- Migrated Appveyor tests to [Azure
Pipelines](https://dev.azure.com/ogsci/ogs/_build). #2342
- Added cppcheck, clang-tidy and include-what-you-use. #2078, #2328, #2377
- Added check for header standalone compilation, can be enabled with
'OGS_CHECK_HEADER_COMPILATION=ON'. #2043
- Jenkins shows nice summaries of compiler warnings. #2206
- Large tests are fixed and run on Jenkins upon master merge. #2056, #2155
- Re-enabled code coverage reports (for the testrunner only) with
[Codecov](http://codecov.io/gh/ufz/ogs). #2333, #2336
- Commits containing `[ci skip]` in the commit message do not trigger a Jenkins
build.
- Add `vtkdiff` test configuration to project files, s.t. the vtkdiff tests are
performed after successful run comparing output to reference files. This
possibility is also reflected in a new CMake function `OgsTest` as an
alternative to the `AddTest`. #2255, #2257
### New tools
- `TecPlotTools`: splitting files containing multiple zones into seperate
TecPlot files. #2114
- `TecPlot-Reader`: converting TecPlot rasters into OGS meshes (one file per
zone, containing all variables as scalar arrays). #2114
- [`constructMeshesFromGeometry`](https://www.opengeosys.org/docs/tools/model-preparation/constructmeshesfromgeometry/):
Construction of boundary meshes from bulk mesh and gml files. #2144
- [`identifySubdomains`](https://www.opengeosys.org/docs/tools/model-preparation/identifysubdomains/):
Identification of boundary meshes (or any subdomains in general) in the bulk
mesh. Performs geometrical tests and creates and verifies necessary
`bulk_node_ids` and `bulk_element_ids` maps. #2227, #2252
- `Mesh2Raster`: converts 2D OGS meshes into raster files of arbitrary pixel
size, where node elevation is represented by pixel value. #2367
- `GocadSGridReader` tool reading the Gocad/SKUA stratigraphic grid format and
writing the data in the vtu format. #2316
### New tools and CLI usage
- `ogs --help` shows the given CMake options. #2210
- Unify command line version info output. #2194
- Rewrite `partmesh` tool and add partitioning of boundary meshes (or subdomains
in general) according to the partition of the bulk mesh. #2159, #2178, #2195
- Add new features to `ExtractSurface` tool. #2387, #2401
- updated utility `moveMeshNodes`: algorithm for mesh on mesh mapping now
calculates exact node elevation instead of using interpolation. #2390
### Data Explorer
- Listing of source terms and boundary conditions in Data Explorer DataView (no
visualisation yet). #2110
- Mesh element removal can now remove elements based on value ranges of
arbitrary scalar arrays (currently only int- and double arrays are supported).
#2115
- added custom VTK filter to represent raster data as point clouds. #2121
- geometrical points can now be converted into station points. #2369
- fixed issue with geometrical surfaces not being loaded correctly. #2388
### Other notable code changes
- C++17 standard is enabled and is allowed in the production code (given the
compiler support). #2298
- Separate monolithic ProcessLib into individual processes. Now it is possible
to build ogs with selected processes only. This also improves linking times.
#2017
- Parameters are extracted in own library. #2413
- Port secondary variable extrapolation and output for PETSc builds. #2082
- Extend Kelvin mapping functions and move implementation to MathLib. #2060,
#2075, #2044
- Collect generic algorithms in single header file. #2161
- Remove unused MeshSubsets class. #2135
- Removed writing of xsd header in XML files, #2198
## Infrastructure
- Migrated LFS storage from GitLab to [Artifactory](https://ogs.jfrog.io/ogs).
#2359
- Optimized ctest runtime by starting long-running benchmarks first. #2310
- Proper RPATH handling for shared library installations. #2208
- [Package OGS inside
container](https://www.opengeosys.org/docs/userguide/basics/container/) with
[Singularity](https://www.sylabs.io/singularity/); [more
docs](https://www.opengeosys.org/docs/devguide/advanced/singularity/). #2193,
#2356
- Migrated opengeosys.org to a static site generator ([Hugo](https://gohugo.io))
unifying documentation and general OGS info. #2088, #2095, #2123
- Speed-up CMake run time. #2072, #2392
### CMake options changes
- `OGS_USE_PYTHON` enables Python BCs. #2170
- `OGS_BUILD_TESTS` was renamed to `BUILD_TESTING`. #2350
- Added `OGS_USE_CVODE`. #2344
- Added `OGS_BUILD_PROCESSES` for `;`-separated list of processes to build.
#2233
- `OGS_USE_CONAN=ON` is now the default when `conan` was found. #2207
### Version info
- CMake minimum version 3.10
- Visual Studio minimum (and tested) version 2017
- GCC minimum version 6.2 (tested: 6.4)
- Clang minimum version 3.5 (tested: 7.0)
- Boost minimum version 1.66.0
- VTK minimum version 8.1. #2158
- Qt tested version 5.11.2
- Python tested version 3.7.2
# 6.1.0
The changes since the prerelease 6.1.0-rc1 contain few bug fixes and
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