* doc/guix.texi (Invoking guix system): Fix typo.

Signed-off-by: Leo Famulari <leo@famulari.name>

* gnu/packages/mp3.scm (eyed3): Update to 0.8.8.

* gnu/packages/music.scm (beets)[arguments]<#:phases>
[make-python3.7-compatible]: New phase.

Normally we shouldn't disable tests just because they fail.  However,
since the recent glibc update, it's not possible to keep using an old
khal, because khal requires locales to be set up properly.

* gnu/packages/calendar.scm (khal)[arguments]: Disable a failing test.

StumpWM version 1.0.0 was the last version to support lisps other than SBCL.
This patch renames the current version of Stumpwm to simply 'stumpwm' instead
of 'sbcl-stumpwm' since it's redundant, and removes the unmaintained
'ecl-stumpwm' package.

* gnu/packages/lisp.scm (sbcl-stumpwm): Deprecate in favor of 'stumpwm'.
[name]: Rename to 'stumpwm'.
[arguments]: Set '#:asd-system-name' to 'stumpwm'.
[properties]: Replace ecl-variant with cl-source-variant.
(ecl-stumpwm): Remove variable.
(cl-stumpwm): Replace 'sbcl-stumpwm' with 'stumpwm' and adapt.
(sbcl-stumpwm+slynk): Deprecate in favor of 'stumpwm+slynk'.
[name]: Rename to 'stumpwm-with-slynk'.
[inherit, inputs, arguments]: Replace 'sbcl-stumpwm' with 'stumpwm'.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>

* gnu/packages/syncthing.scm (go-github-com-client-golang-prometheus):
Update to 0.9.1-0.7e9098b.
[arguments]: Skip the test suite.

* gnu/packages/syncthing (go-github-com-syncthing-notify): Update to 0.0.0-3.116c45b.

* gnu/packages/syncthing.scm (syncthing): Update to 0.14.53.
[source]: Use bundled libraries.
[inputs]: Remove field.
[arguments]: Simplify the 'build' phase.

* gnu/packages/xml.scm (python-xmltodict): New variable.

* gnu/packages/web-browsers.scm (sbcl-next): Update to 1.1.0.

* gnu/packages/web-browsers.scm (next-gtk-webkit): Update to 1.1.0.

I guess this broke when upgrading go. I did try upgrading to the later patch
and minor releases, but they had similar problems, so lets upgrade separately.

* gnu/packages/databases.scm (mongo-tools)[arguments]: Add patch-source phase.

* gnu/packages/tls.scm (mbedtls-apache): Update to 2.14.1.

* gnu/packages/samba.scm (gnu): Sort imports.

* gnu/packages/samba.scm (ldb): Update to 1.4.3.
[inputs]: Add LMDB.

* gnu/packages/samba.scm (samba): Update to 4.9.3.
[inputs]: Add GPGME, JANSSON, LIBARCHIVE and LMDB.

* gnu/packages/regex.scm (re2): Update to 2018-12-01.

* gnu/packages/regex.scm (re2)[source]: Change to GIT-FETCH.

* gnu/packages/django.scm (python-django): Update to 1.11.17.

Looks like this test isn't compiling with newer versions of go, so fix it to
get the package building again.

* gnu/packages/golang.scm (go-gopkg.in-tomb.v2)[arguments]: Add new
patch-source phase.

* gnu/packages/dictionaries.scm (apertium): New variable.

* gnu/packages/dictionaries.scm (lttoolbox): New variable.

* gnu/packages/dictionaries.scm: Import (guix licenses) with license:
prefix. Fix all license fields.

* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.5.
[inputs]: Replace snakemake-4 with snakemake.

* gnu/packages/algebra.scm (pari-gp): Update to 2.11.1.

* gnu/packages/emacs.scm (emacs-irony-mode)[source]: Rewrite in terms of GIT-FETCH.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

* gnu/packages/enlightenment.scm (enlightenment)[arguments]: In
'set-system-actions', set absolute file name to 'edje_cc'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

* gnu/packages/simulation.scm (fenics)[arguments]: Add 'curl-curl'
demo to list of demos that require meshes supplied by git-lfs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add hypre-openmpi.
[arguments]: Add 'with-hypre=1' flag.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

* guix/grafts.scm (graft-derivation/shallow): Pass #:substitutable? to
'build-expression->derivation'.

* guix/scripts/refresh.scm (all-packages): Filter out deprecated packages.

* config-daemon.ac (guix_substitute_urls): Always default to
"https://ci.guix.info".
* doc/guix.texi (SUBSTITUTE-SERVER): Switch to ci.guix.info.
* guix/scripts/build.scm (%default-log-urls): Likewise.
* guix/scripts/substitute.scm (%default-substitute-urls): Likewise.
* guix/store.scm (%default-substitute-urls): Likewise.

* Makefile.am (assert-binaries-available): Don't mention hydra.gnu.org
in comment.
* build-aux/check-available-binaries.scm: Likewise.
* build-aux/check-final-inputs-self-contained.scm: Likewise.
* doc/guix.texi (SUBSTITUTE-SERVER): New variable.
Use it throughout instead of "mirror.hydra.gnu.org".
* doc/contributing.texi (Submitting Patches): Likewise.
* gnu/services/base.scm (hydra-key-authorization)
(guix-activation): Remove mentions of "hydra.gnu.org" in comments and
messages.
* gnu/system/install.scm (%installation-services): Likewise.
* guix/scripts/size.scm (guix-size): Likewise.

* etc/substitutes/ci.guix.info.pub: New file.
* Makefile.am (dist_pkgdata_DATA): Add it.
* guix/self.scm (miscellaneous-files): Add
"share/guix/ci.guix.info.pub".

* gnu/packages/emulators.scm (dolphin-emu): Update to commit 2c57e70.

This patch fixes warnings about unrecognized keywords in logs.

* gnu/services/dns.scm (serialize-field): Skip some field names.

* gnu/packages/music.scm (beets): Update to 1.4.7.

* gnu/packages/python.scm (python-unidecode, python2-unidecode): Update to
1.0.23.

* gnu/packages/patches/beets-python-3.7-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
*  gnu/packages/music.scm (beets)[source]: Use it.

Thank you, Handshake!

* gnu/packages/dns.scm (hnsd): New variable.